Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   RRV97_RS11305 Genome accession   NZ_CP135440
Coordinates   2374262..2376394 (+) Length   710 a.a.
NCBI ID   WP_315611565.1    Uniprot ID   A0AA96NC23
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2369262..2381394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS11285 (RRV97_11285) pilM 2371293..2372384 (+) 1092 WP_315611562.1 type IV pilus assembly protein PilM -
  RRV97_RS11290 (RRV97_11290) pilN 2372389..2373012 (+) 624 WP_315611563.1 PilN domain-containing protein Machinery gene
  RRV97_RS11295 (RRV97_11295) - 2373012..2373683 (+) 672 WP_315611564.1 type 4a pilus biogenesis protein PilO -
  RRV97_RS11300 (RRV97_11300) pilP 2373699..2374241 (+) 543 WP_049347906.1 pilus assembly protein PilP Machinery gene
  RRV97_RS11305 (RRV97_11305) pilQ 2374262..2376394 (+) 2133 WP_315611565.1 type IV pilus secretin PilQ Machinery gene
  RRV97_RS11310 (RRV97_11310) - 2376525..2377037 (+) 513 WP_283254529.1 shikimate kinase -
  RRV97_RS11315 (RRV97_11315) aroB 2377059..2378138 (+) 1080 WP_315611566.1 3-dehydroquinate synthase -
  RRV97_RS11320 (RRV97_11320) - 2378268..2379581 (-) 1314 WP_315611567.1 sensor histidine kinase -
  RRV97_RS11325 (RRV97_11325) - 2379611..2380288 (-) 678 WP_315611568.1 response regulator -
  RRV97_RS11330 (RRV97_11330) - 2380433..2380999 (-) 567 WP_049333517.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 78022.18 Da        Isoelectric Point: 9.6985

>NTDB_id=886656 RRV97_RS11305 WP_315611565.1 2374262..2376394(+) (pilQ) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MKTKHMTKLFAGFSVALAVQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFANTNIRLPQPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTNAAVANERAATPSTARATQAYQAVSAANI
DFRKGARNSGIIELSAPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKASSGRFVFEISPKAANTESGGLNQNANKSFKGRKISLDFQDVEVRTILQILAKESGVNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLEEYDS
NNSNTRNTLLSNRGSALIDPATNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGSGGASGR
TAWGSNWSNAQTNYNTNASFNRGDVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEASSSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPILGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNVGNNLRY

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=886656 RRV97_RS11305 WP_315611565.1 2374262..2376394(+) (pilQ) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGAAAACCAAGCACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTGTTCAGACGGCCTTTGCAGGCAATAT
TACCGATATCAACGTTTCCACTTTGCCTGACAACCAAAAAATTATCAAAATCCGTTTCGACAAAGACGTCACCACACCTC
ATGGTTTTGTAACATCTACTCCGGCGCGTATTGCATTGGATTTTGCCAACACCAATATCCGTTTGCCCCAGCCTGTTTTG
GAATATGCCGACCCCTTGCTGAATCAAATTACTGCGGCACAAAACAACGACCGCGCACGCGTGGTTTTGGGTTTGAACAA
AATCAGCCAATACAATACTGAAATTCGCGGCAACGAAGTTTGGGTATTCGTAAACGAATCTACTGACCAAACCAATGCGG
CCGTTGCAAATGAACGTGCGGCTACACCGTCTACCGCGCGCGCTACTCAGGCTTATCAAGCCGTTTCGGCTGCCAATATC
GATTTCCGCAAAGGCGCACGCAATTCCGGCATTATTGAATTGTCCGCTCCGGGTTTCAGCGGACAGCCGGACATCAAACA
GCAACGCGACCGCGTCGTTGTAACCTTGAAAAACCATACGCTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCTGACT
TCAATACGCCTGTACAAAACGTTACGCTCAAACGTATCGGCAATTCTACCCAGCTCATTATCCGCAACAATAATGCGAAT
TGGGACATCAATACCAAAGCCTCTTCCGGCCGTTTTGTATTTGAAATATCGCCTAAAGCCGCCAATACCGAATCCGGCGG
CTTGAACCAAAATGCGAATAAATCGTTTAAAGGCCGTAAAATTTCCTTGGACTTCCAAGATGTAGAAGTCCGTACCATTT
TGCAGATTTTGGCGAAAGAGTCCGGCGTGAATATTGTTGCCAGCGATACCGTCAAAGGTACCATGACCCTGTCCTTGAAA
GATGTACCTTGGGATCAGGCATTGGATTTGGTCATGCAGGCGCGCAATTTGGATATGCGCCGTCAAGGCAATATCATTAA
TATCGCCCCCCGCGATGAATTGTTGGCAAAAGACAAAGCTTTCTTGCAGGCGGAAAAAGAGATTGCCGAATTGGGTCCGC
TGTATTCTCAAACCTTCCAGTTGAAATACAAAAACGTGGAAGAATTCCGGAAAATTTTGCGTTTGGAAGAATACGACAGC
AATAATTCCAATACCCGCAACACTCTGTTGAGCAACCGAGGCAGCGCCTTAATCGATCCGGCCACCAATACGCTGATCGT
AACCGACAACCGCGGCGTGATTGAGAAATTCCGTAAACTGATTGATGAATTGGACGTTCCGACCCGTCAAGTGATGGTTG
AAGCGCGCATTGTCGAAGCAGAAGATACCTTCTTCCGCAACTTGGGCGTTAAATTCGGTTCCGGTGGTGCGAGCGGCCGT
ACGGCATGGGGTAGCAACTGGAGCAATGCGCAAACCAACTACAATACCAATGCCTCGTTTAACCGTGGTGACGTAGGCTA
CCGCACATGGACTTTGGATCCGAACGTCAGTCTGCCGACCGCAGCCGCAGTCAACAGCATTGCGCTGGTGCGAGCGTTCT
CGTCCGGCGCATTGGGTTTGGAAATCAGCGCGTCTGAAGAGCAAGGTAAGAGCAAAACCATTTCCAATCCGCGCGTGCTG
ACACAAGACCGTAAAGAAGCCAAAATTGAATCCGGTACGGAAATCCCTTACCAAGAAGCTTCTTCCAGCGGTGCGACTTC
GATTACCTTCAAGAAAGCCGTTTTGGGTTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATCATCATGACGGTGA
AGATTAATCGCGATACCCCGATCGACTGTACCGTGGATTCTCTGACAACCAAGTGTATCAACACCAAACACTTGAATACC
CAAGCCATGGTTGAAGATGGCGGTACGCTGATCGTCGGCGGTATTTACGAGGAAGAAAGCACCAATGCGGTGAACAAAGT
ACCTATTTTGGGCGATATTCCTGTTGTCGGCAATCTGTTCAAATCACGCGGCAAACGTGAAAACCGCCGTGAGCTGTTGA
TTTTTATCACGCCGCGCATTATGGACAATGTGGGTAACAATCTACGTTATTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(545-702)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-450)

Secretin and TonB N terminus short domain (STN)

(303-350)

AMIN domain (AMIN)

(38-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

64.722

100

0.672
  pilQ Neisseria meningitidis MC58

60.664

100

0.669
  pilQ Neisseria meningitidis M1080

61.29

100

0.669