Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   RRV97_RS11300 Genome accession   NZ_CP135440
Coordinates   2373699..2374241 (+) Length   180 a.a.
NCBI ID   WP_049347906.1    Uniprot ID   A0A9X9SN29
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2368699..2379241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS11280 (RRV97_11280) - 2368744..2371140 (-) 2397 WP_315611561.1 penicillin-binding protein 1A -
  RRV97_RS11285 (RRV97_11285) pilM 2371293..2372384 (+) 1092 WP_315611562.1 type IV pilus assembly protein PilM -
  RRV97_RS11290 (RRV97_11290) pilN 2372389..2373012 (+) 624 WP_315611563.1 PilN domain-containing protein Machinery gene
  RRV97_RS11295 (RRV97_11295) - 2373012..2373683 (+) 672 WP_315611564.1 type 4a pilus biogenesis protein PilO -
  RRV97_RS11300 (RRV97_11300) pilP 2373699..2374241 (+) 543 WP_049347906.1 pilus assembly protein PilP Machinery gene
  RRV97_RS11305 (RRV97_11305) pilQ 2374262..2376394 (+) 2133 WP_315611565.1 type IV pilus secretin PilQ Machinery gene
  RRV97_RS11310 (RRV97_11310) - 2376525..2377037 (+) 513 WP_283254529.1 shikimate kinase -
  RRV97_RS11315 (RRV97_11315) aroB 2377059..2378138 (+) 1080 WP_315611566.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20029.48 Da        Isoelectric Point: 5.0186

>NTDB_id=886655 RRV97_RS11300 WP_049347906.1 2373699..2374241(+) (pilP) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MKKIILLLSLLPLAACTQSYEDLTQWMTQTRQEAKSKIIPFEEPTVTLPKPYNPPNFKGLNAFDSRRLDTAPKGGNAPDV
NRPKETLEAFSLENMAFVGTLQSGGKVSGFIKVNDHVYTVYPGNYIGQNYGRIQSITEDKIILTEQVEDSYGNWVYRKAE
LPLSSKEADSSDSSDSSNSN

Nucleotide


Download         Length: 543 bp        

>NTDB_id=886655 RRV97_RS11300 WP_049347906.1 2373699..2374241(+) (pilP) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGAAAAAAATCATCTTACTCTTAAGTCTTCTTCCCTTGGCAGCCTGCACGCAAAGCTATGAAGATTTGACTCAATGGAT
GACGCAAACCCGTCAGGAAGCAAAATCCAAGATTATTCCGTTTGAAGAGCCGACGGTTACATTGCCCAAGCCGTATAACC
CTCCAAATTTTAAGGGCTTGAATGCGTTTGATTCACGCCGTTTGGATACCGCCCCCAAAGGCGGTAATGCGCCGGATGTA
AACCGTCCGAAAGAAACCTTGGAAGCCTTCAGTCTGGAAAACATGGCTTTTGTCGGAACGCTGCAAAGCGGCGGCAAAGT
TTCCGGATTTATCAAAGTCAACGACCATGTTTATACCGTTTATCCCGGAAACTACATCGGTCAGAATTACGGCAGAATCC
AAAGTATTACTGAAGATAAAATTATCCTGACCGAGCAAGTTGAAGACAGCTACGGCAACTGGGTGTACCGGAAGGCAGAA
TTGCCGTTGAGCAGCAAAGAGGCAGATTCTTCCGATAGCTCAGATAGTTCGAATTCAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

60

94.444

0.567