Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RRV97_RS11290 Genome accession   NZ_CP135440
Coordinates   2372389..2373012 (+) Length   207 a.a.
NCBI ID   WP_315611563.1    Uniprot ID   A0AA96NBH1
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2367389..2378012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS11275 (RRV97_11275) - 2367847..2368683 (-) 837 WP_315611560.1 PHP domain-containing protein -
  RRV97_RS11280 (RRV97_11280) - 2368744..2371140 (-) 2397 WP_315611561.1 penicillin-binding protein 1A -
  RRV97_RS11285 (RRV97_11285) pilM 2371293..2372384 (+) 1092 WP_315611562.1 type IV pilus assembly protein PilM -
  RRV97_RS11290 (RRV97_11290) pilN 2372389..2373012 (+) 624 WP_315611563.1 PilN domain-containing protein Machinery gene
  RRV97_RS11295 (RRV97_11295) - 2373012..2373683 (+) 672 WP_315611564.1 type 4a pilus biogenesis protein PilO -
  RRV97_RS11300 (RRV97_11300) pilP 2373699..2374241 (+) 543 WP_049347906.1 pilus assembly protein PilP Machinery gene
  RRV97_RS11305 (RRV97_11305) pilQ 2374262..2376394 (+) 2133 WP_315611565.1 type IV pilus secretin PilQ Machinery gene
  RRV97_RS11310 (RRV97_11310) - 2376525..2377037 (+) 513 WP_283254529.1 shikimate kinase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23104.33 Da        Isoelectric Point: 4.7171

>NTDB_id=886654 RRV97_RS11290 WP_315611563.1 2372389..2373012(+) (pilN) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MIELTRINLLPYREEIKQRKQQQFKILMLGAFAVGLGLAAATYLSIDSAISNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNTLTPDNTYLTALEAESPTSYKISGHAISDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPAPTAQSSGEMAEPVAEPAPEAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=886654 RRV97_RS11290 WP_315611563.1 2372389..2373012(+) (pilN) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGATCGAATTAACCAGAATCAACCTTCTCCCATATCGGGAAGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAATATT
GATGCTTGGTGCTTTTGCAGTGGGTTTGGGCTTGGCGGCCGCTACCTATCTCAGTATTGACAGCGCCATCAGCAATCAAG
AAGGGCGCAACAACTTCCTGCAAACCGAAATTGACAGACTTGATAGAGAATTGGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTGGCTAAAAAGCTGAAAGTGGAAGAATTGCAGGAAAAACGCTATCAAGCGGCCTATATCCTTGATTC
TTTGAATACGCTTACGCCCGATAATACTTATTTGACCGCGTTGGAAGCCGAAAGCCCGACCAGCTATAAAATCAGCGGCC
ATGCCATCAGCGACAATAAAATCGCCGTTATGATGCGCTCCCTGCCGAGTACAGGTATTTTTTTGCAGCCTGAATTGTTG
AGCATTAAAAAAGTAGATAACTACCAAGAATTTACTTTGAAATCTTCAATCAACCAGGTGAATACGCCGGCTCCCGCACC
GACTGCCCAAAGCAGCGGTGAAATGGCCGAACCTGTGGCCGAACCTGCTCCGGAGGCTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

56.345

95.169

0.536