Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | RRV97_RS09875 | Genome accession | NZ_CP135440 |
| Coordinates | 2094135..2094431 (+) | Length | 98 a.a. |
| NCBI ID | WP_315611429.1 | Uniprot ID | A0AA96NBE6 |
| Organism | Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2089135..2099431
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RRV97_RS09845 (RRV97_09845) | - | 2089225..2089383 (-) | 159 | WP_315611425.1 | hypothetical protein | - |
| RRV97_RS09850 (RRV97_09850) | - | 2089489..2089728 (-) | 240 | WP_049336928.1 | hypothetical protein | - |
| RRV97_RS09855 (RRV97_09855) | - | 2089806..2090702 (-) | 897 | WP_315611426.1 | AAA family ATPase | - |
| RRV97_RS09860 (RRV97_09860) | - | 2090720..2092747 (-) | 2028 | WP_315611427.1 | Mu transposase C-terminal domain-containing protein | - |
| RRV97_RS09865 (RRV97_09865) | - | 2092791..2093054 (-) | 264 | WP_079453753.1 | helix-turn-helix domain-containing protein | - |
| RRV97_RS09870 (RRV97_09870) | - | 2093257..2093970 (+) | 714 | WP_315611428.1 | helix-turn-helix transcriptional regulator | - |
| RRV97_RS09875 (RRV97_09875) | comE | 2094135..2094431 (+) | 297 | WP_315611429.1 | ComEA family DNA-binding protein | Machinery gene |
| RRV97_RS09880 (RRV97_09880) | comP | 2094608..2095102 (+) | 495 | WP_315611430.1 | type IV pilin protein | Machinery gene |
| RRV97_RS09885 (RRV97_09885) | - | 2095848..2096144 (-) | 297 | WP_315611431.1 | hypothetical protein | - |
| RRV97_RS09890 (RRV97_09890) | pyrB | 2096143..2097063 (+) | 921 | WP_188213381.1 | aspartate carbamoyltransferase | - |
| RRV97_RS09895 (RRV97_09895) | pyrI | 2097074..2097532 (+) | 459 | WP_315611432.1 | aspartate carbamoyltransferase regulatory subunit | - |
| RRV97_RS09900 (RRV97_09900) | - | 2097726..2098391 (+) | 666 | WP_315611433.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 9996.69 Da Isoelectric Point: 10.3874
>NTDB_id=886649 RRV97_RS09875 WP_315611429.1 2094135..2094431(+) (comE) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MQKLTVPHIGVVAAVCTAFSLAAVNVNTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKA
EATVSSAAPKAAQPAVKK
MQKLTVPHIGVVAAVCTAFSLAAVNVNTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKA
EATVSSAAPKAAQPAVKK
Nucleotide
Download Length: 297 bp
>NTDB_id=886649 RRV97_RS09875 WP_315611429.1 2094135..2094431(+) (comE) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
GTGCAAAAACTAACAGTCCCCCACATTGGTGTAGTTGCCGCCGTTTGTACGGCGTTCTCTTTGGCTGCCGTGAACGTCAA
TACGGCCTCTTCTGCGGAACTGGAGGCATTGCCGGGTATCGGCCCGGCTAAGGCGAAGGCGATTGTGGAATACCGTCAGA
AGAACGGTGCGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCG
GAGGCGACGGTTTCTTCTGCCGCGCCTAAGGCCGCCCAACCTGCCGTGAAAAAATAA
GTGCAAAAACTAACAGTCCCCCACATTGGTGTAGTTGCCGCCGTTTGTACGGCGTTCTCTTTGGCTGCCGTGAACGTCAA
TACGGCCTCTTCTGCGGAACTGGAGGCATTGCCGGGTATCGGCCCGGCTAAGGCGAAGGCGATTGTGGAATACCGTCAGA
AGAACGGTGCGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCG
GAGGCGACGGTTTCTTCTGCCGCGCCTAAGGCCGCCCAACCTGCCGTGAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
68.605 |
87.755 |
0.602 |
| comE | Neisseria gonorrhoeae MS11 |
68.605 |
87.755 |
0.602 |
| comE | Neisseria gonorrhoeae MS11 |
68.605 |
87.755 |
0.602 |
| comE | Neisseria gonorrhoeae MS11 |
68.605 |
87.755 |
0.602 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
48.81 |
85.714 |
0.418 |
| comEA | Staphylococcus aureus MW2 |
47.059 |
86.735 |
0.408 |