Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   RRU92_RS01955 Genome accession   NZ_CP135436
Coordinates   388973..389635 (-) Length   220 a.a.
NCBI ID   WP_315640204.1    Uniprot ID   A0AA96MQJ3
Organism   Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383973..394635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRU92_RS01930 (RRU92_01930) - 384116..384382 (-) 267 WP_000128621.1 Veg family protein -
  RRU92_RS01935 (RRU92_01935) dnaB 384379..385737 (-) 1359 WP_315640201.1 replicative DNA helicase -
  RRU92_RS01940 (RRU92_01940) rplI 385780..386232 (-) 453 WP_000864205.1 50S ribosomal protein L9 -
  RRU92_RS01945 (RRU92_01945) - 386229..388202 (-) 1974 WP_315640203.1 DHH family phosphoesterase -
  RRU92_RS01950 (RRU92_01950) hpf 388351..388893 (-) 543 WP_045762429.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RRU92_RS01955 (RRU92_01955) comFC/cflB 388973..389635 (-) 663 WP_315640204.1 ComF family protein Machinery gene
  RRU92_RS01960 (RRU92_01960) comFA/cflA 389632..390930 (-) 1299 WP_281335419.1 DEAD/DEAH box helicase Machinery gene
  RRU92_RS01965 (RRU92_01965) - 390986..391621 (+) 636 WP_315640205.1 YigZ family protein -
  RRU92_RS01970 (RRU92_01970) - 391638..392081 (+) 444 WP_281335421.1 PH domain-containing protein -
  RRU92_RS01975 (RRU92_01975) cysK 392178..393104 (+) 927 WP_315640206.1 cysteine synthase A -
  RRU92_RS01980 (RRU92_01980) tsf 393229..394269 (-) 1041 WP_000808094.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25354.66 Da        Isoelectric Point: 8.5360

>NTDB_id=886508 RRU92_RS01955 WP_315640204.1 388973..389635(-) (comFC/cflB) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
MKCLLCGKSLQTEITFTNLLCFKKEEEIVCESCISSFESIGSNHCPTCFKKGMSIICQDCQFWCKKGVKVDHVALYSYNQ
VMKEYFSRYKFDGDYLLRKVFSKILQTELKKYKDYQIVIVPLSEQRFKSRGFNQVEGLIKDTGLAYLDILVKKEVEASSS
KNRADRLLTDFPFLLKEGVKLPENILLFDDIYTTGTTLNRLKSMLLEAGCQNIKTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=886508 RRU92_RS01955 WP_315640204.1 388973..389635(-) (comFC/cflB) [Streptococcus sp. DTU_2020_1001019_1_SI_AUS_MUR_006]
ATGAAGTGTTTATTGTGTGGTAAAAGCTTGCAAACAGAGATAACCTTTACTAACCTGCTCTGTTTTAAAAAGGAGGAGGA
AATAGTCTGTGAATCCTGTATTTCGTCTTTCGAGAGTATCGGTAGTAATCATTGTCCTACTTGTTTTAAAAAAGGAATGT
CAATCATCTGTCAAGATTGTCAATTTTGGTGTAAAAAAGGTGTAAAGGTTGATCATGTAGCTCTTTATTCCTATAATCAG
GTCATGAAAGAATATTTTAGTCGCTACAAATTTGATGGTGATTATCTTCTTAGAAAGGTATTTTCTAAAATTTTGCAAAC
AGAGTTAAAAAAGTATAAGGATTACCAGATTGTGATCGTACCTCTGAGTGAGCAGCGTTTTAAAAGTAGAGGCTTTAATC
AAGTAGAGGGTTTGATAAAGGATACTGGGTTAGCATATCTGGATATTTTGGTTAAAAAAGAAGTGGAGGCTAGTTCTTCA
AAAAATCGAGCAGATCGTTTACTTACAGACTTTCCTTTTTTATTGAAAGAGGGAGTGAAGCTCCCAGAAAATATCTTACT
CTTTGATGATATTTATACAACTGGAACTACCTTGAATCGTCTTAAAAGTATGCTATTAGAAGCTGGTTGTCAGAATATTA
AAACTTTTTCCCTCGCAAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

58.636

100

0.586
  comFC/cflB Streptococcus pneumoniae TIGR4

57.727

100

0.577
  comFC/cflB Streptococcus pneumoniae Rx1

57.727

100

0.577
  comFC/cflB Streptococcus pneumoniae D39

57.727

100

0.577
  comFC/cflB Streptococcus pneumoniae R6

57.727

100

0.577
  comFC/cflB Streptococcus mitis SK321

56.364

100

0.564