Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RRP28_RS00715 Genome accession   NZ_CP135285
Coordinates   148795..150288 (-) Length   497 a.a.
NCBI ID   WP_017682754.1    Uniprot ID   A0AAN4PZQ2
Organism   Pseudomonas syringae pv. actinidiae strain Yunnan2.4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 143795..155288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRP28_RS00695 (RRP28_00695) - 143955..145352 (+) 1398 WP_003377957.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  RRP28_RS00700 (RRP28_00700) - 145628..146026 (-) 399 WP_003377955.1 GFA family protein -
  RRP28_RS00705 (RRP28_00705) - 146326..147633 (+) 1308 WP_017682753.1 CitMHS family transporter -
  RRP28_RS29190 - 147725..147808 (-) 84 Protein_142 Mg chelatase-like protein -
  RRP28_RS00710 (RRP28_00710) - 147826..148758 (-) 933 WP_003377951.1 type III effector -
  RRP28_RS00715 (RRP28_00715) comM 148795..150288 (-) 1494 WP_017682754.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RRP28_RS00720 (RRP28_00720) - 150726..152024 (+) 1299 WP_017705041.1 hypothetical protein -
  RRP28_RS29195 - 152021..152701 (-) 681 WP_158101993.1 MAE_28990/MAE_18760 family HEPN-like nuclease -
  RRP28_RS00725 (RRP28_00725) - 152728..153774 (-) 1047 WP_017682755.1 DUF262 domain-containing protein -
  RRP28_RS00730 (RRP28_00730) - 154043..154150 (-) 108 Protein_148 magnesium chelatase -
  RRP28_RS00735 (RRP28_00735) - 154274..154777 (-) 504 WP_017682757.1 RES family NAD+ phosphorylase -
  RRP28_RS00740 (RRP28_00740) - 154774..155250 (-) 477 WP_017682758.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53048.85 Da        Isoelectric Point: 7.6930

>NTDB_id=886418 RRP28_RS00715 WP_017682754.1 148795..150288(-) (comM) [Pseudomonas syringae pv. actinidiae strain Yunnan2.4]
MSLAIVHSRAQVGVEAPAVTVEAHLTNGLPALTLVGLPEGAVKESKDRVRSAILNSGLDFPARRITLNLAPADLPKDGGR
FDLAIALGLLAASGQIPLVALQDVECLGELALSGAIRPIQGVLPAALAARAAERTLIIPAVNAEEACLASGLRVIAVSHL
LELVGHFNGRTVIAPYQSSGLLHQPKPYPDLSEVQGQTAAKRALVIAAAGAHNLLFSGPPGTGKTLLDSRLPGLLPPLDE
QEALEVAAIQSVASQIPLTSWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPTGRCRCSTEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPDPTT
SENTASAAAVVAQARARQQQRQGCANAFLDLPGLRTYCALSSTDERWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
ITRSHLAEALQYRPSSN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=886418 RRP28_RS00715 WP_017682754.1 148795..150288(-) (comM) [Pseudomonas syringae pv. actinidiae strain Yunnan2.4]
ATGTCGCTGGCCATCGTCCATAGTCGTGCCCAGGTCGGGGTGGAAGCCCCGGCGGTTACTGTTGAAGCGCATCTGACCAA
TGGCCTGCCGGCCCTCACGCTGGTGGGGTTGCCGGAGGGCGCGGTCAAGGAGAGCAAGGACCGGGTGCGCAGTGCGATTC
TCAATTCCGGGCTGGATTTTCCGGCACGGCGTATCACGCTCAATCTGGCGCCGGCTGATTTGCCCAAGGACGGTGGTCGT
TTTGACCTGGCCATTGCGCTGGGTTTGCTGGCGGCCAGCGGGCAGATACCGCTGGTTGCGTTGCAGGATGTTGAATGCCT
GGGCGAGCTGGCGTTGTCGGGGGCGATTCGGCCGATTCAGGGGGTGTTACCTGCTGCGCTGGCGGCGCGTGCGGCGGAGC
GGACGCTGATCATCCCGGCGGTGAATGCCGAGGAGGCTTGCCTGGCATCTGGGTTGCGGGTGATTGCGGTGAGTCATTTG
CTGGAGCTGGTCGGGCATTTCAACGGGCGCACGGTGATTGCGCCGTATCAGTCCAGCGGCCTGCTGCATCAGCCCAAGCC
TTATCCGGATTTAAGCGAGGTGCAGGGCCAAACTGCAGCGAAGCGTGCCCTGGTGATTGCCGCTGCCGGGGCGCATAACC
TGTTGTTCAGCGGGCCGCCCGGCACCGGCAAAACACTGCTCGACAGTCGCCTGCCGGGGTTGTTGCCGCCGCTGGATGAG
CAAGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTCGCCAGCCAGATACCGTTGACCAGTTGGCCGCAGCGGCCGTTTCG
CCAGCCGCATCACTCGGCGTCTGGCCCGGCGTTGGTAGGCGGCGGCAGTCGTCCGCAACCTGGCGAGATCACCCTGGCCC
ATCACGGCGTTCTATTCCTTGATGAGCTGCCGGAGTTTGATCGCCGTGTACTGGAGGTTCTACGTGAGCCGCTGGAGTCG
GGGCATATCGTGATTTCCCGTGCGCGGGATCGCGTGCGCTTTCCGGCGCGGTTTCAGTTGGTGGCGGCGATGAACCCATG
CCCCTGTGGATATCTCGGTGAGCCAACCGGGCGCTGTCGTTGTTCCACCGAGCAGGTGCAGCGCTATCGCAACAAGCTGT
CCGGCCCGTTGCTGGACCGAATTGACCTGCACCTGACGGTCGCCCGAGAGGCTACGGCGCTCAATCCCGACCCGACCACC
AGTGAAAACACCGCCAGCGCTGCCGCAGTGGTTGCGCAGGCTCGCGCACGCCAGCAGCAACGTCAGGGCTGCGCCAATGC
GTTTCTCGATCTGCCGGGGCTGCGCACCTATTGCGCGCTGTCGAGCACCGACGAACGCTGGCTGGAAACGGCCTGCGAGC
GCCTGACCTTGTCGCTGCGCTCGGCTCATCGGCTGTTGAAAGTGGCGCGTACTCTGGCGGATCTGGAGCAGGTGGACGCG
ATCACTCGCAGCCATCTGGCCGAGGCGTTGCAGTATCGACCTTCGAGTAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

53.6

100

0.539
  comM Vibrio campbellii strain DS40M4

53.939

99.598

0.537
  comM Haemophilus influenzae Rd KW20

52.8

100

0.531
  comM Legionella pneumophila str. Paris

48.713

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.713

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.219

100

0.457