Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RQP58_RS22170 Genome accession   NZ_CP135261
Coordinates   4520588..4522108 (+) Length   506 a.a.
NCBI ID   WP_182931324.1    Uniprot ID   -
Organism   Enterobacter asburiae strain FAHZZU5722     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4515588..4527108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQP58_RS22145 (RQP58_22145) ilvE 4517154..4518083 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  RQP58_RS22150 (RQP58_22150) ilvM 4518102..4518365 (-) 264 WP_024907956.1 acetolactate synthase 2 small subunit -
  RQP58_RS22155 (RQP58_22155) ilvG 4518362..4520008 (-) 1647 WP_045889364.1 acetolactate synthase 2 catalytic subunit -
  RQP58_RS22160 (RQP58_22160) ilvX 4520011..4520061 (-) 51 WP_166792073.1 peptide IlvX -
  RQP58_RS22165 (RQP58_22165) ilvL 4520148..4520246 (-) 99 WP_182931323.1 ilv operon leader peptide -
  RQP58_RS22170 (RQP58_22170) comM 4520588..4522108 (+) 1521 WP_182931324.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RQP58_RS22175 (RQP58_22175) - 4522139..4522477 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  RQP58_RS22180 (RQP58_22180) hdfR 4522596..4523417 (+) 822 WP_023309659.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54937.88 Da        Isoelectric Point: 6.8204

>NTDB_id=886339 RQP58_RS22170 WP_182931324.1 4520588..4522108(+) (comM) [Enterobacter asburiae strain FAHZZU5722]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELSEPEECDDVIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=886339 RQP58_RS22170 WP_182931324.1 4520588..4522108(+) (comM) [Enterobacter asburiae strain FAHZZU5722]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACTATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCCCTTGAAGCCATACGAGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCGTCGCGGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGACGACATGAACTGTCCGAGCCGGAGGAGTGTGATGATGTTATAGCGGATGCTCC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGGCCGCCAGGTACGGGTAAAACCATGCTGGCAAGCAGGTTGAGTGGGTTACTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGCGGGGCGATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTTGATGAACTGCCTGAATTTGAGCGCCGTGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACGAGAGCCAAAATAAGCTATCCCGCACAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACACCAGAGCAAACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATTCCCCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCGAACGGGTGATTGCTGCTCAGACGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCGCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCACTTAACGTTGAGGATGCGGGATGGCTGGAAGAGACGTTAACGCGGT
TCGGGCTTTCCATACGTGCGTGGCAGCGTTTGCTGAAGGTGGCCAGAACTATTGCTGACGTAGAGGGGTGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

58.449

99.407

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439