Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RQP58_RS01535 Genome accession   NZ_CP135261
Coordinates   337580..338110 (+) Length   176 a.a.
NCBI ID   WP_029740211.1    Uniprot ID   A0A263VT06
Organism   Enterobacter asburiae strain FAHZZU5722     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 325003..340998 337580..338110 within 0


Gene organization within MGE regions


Location: 325003..340998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQP58_RS01475 (RQP58_01475) dnaB 325003..326415 (+) 1413 WP_023310046.1 replicative DNA helicase -
  RQP58_RS01480 (RQP58_01480) alr 326432..327511 (+) 1080 WP_182931437.1 alanine racemase -
  RQP58_RS01485 (RQP58_01485) - 327808..328472 (+) 665 WP_315425935.1 IS1 family transposase -
  RQP58_RS01490 (RQP58_01490) - 328518..329486 (-) 969 WP_000654812.1 IS5-like element IS903B family transposase -
  RQP58_RS25020 - 329506..329571 (+) 66 WP_391527828.1 hypothetical protein -
  RQP58_RS01495 (RQP58_01495) - 329602..330051 (-) 450 WP_047059578.1 lysozyme -
  RQP58_RS01500 (RQP58_01500) - 330051..330653 (-) 603 WP_033144414.1 DUF2589 domain-containing protein -
  RQP58_RS01505 (RQP58_01505) - 330729..331286 (-) 558 WP_023334176.1 DUF2589 domain-containing protein -
  RQP58_RS01510 (RQP58_01510) tyrB 331493..332686 (+) 1194 WP_182931440.1 aromatic amino acid transaminase -
  RQP58_RS01515 (RQP58_01515) aphA 332904..333617 (+) 714 WP_182072276.1 acid phosphatase AphA -
  RQP58_RS01520 (RQP58_01520) - 333731..334147 (+) 417 WP_023310052.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RQP58_RS01525 (RQP58_01525) - 334150..334503 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  RQP58_RS01530 (RQP58_01530) uvrA 334507..337329 (-) 2823 WP_039264124.1 excinuclease ABC subunit UvrA -
  RQP58_RS01535 (RQP58_01535) ssb 337580..338110 (+) 531 WP_029740211.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RQP58_RS01540 (RQP58_01540) - 338173..338454 (-) 282 WP_008503385.1 YjcB family protein -
  RQP58_RS01545 (RQP58_01545) - 339100..340665 (+) 1566 WP_182931441.1 EAL domain-containing protein -
  RQP58_RS01550 (RQP58_01550) soxS 340672..340998 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18792.81 Da        Isoelectric Point: 5.2456

>NTDB_id=886321 RQP58_RS01535 WP_029740211.1 337580..338110(+) (ssb) [Enterobacter asburiae strain FAHZZU5722]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=886321 RQP58_RS01535 WP_029740211.1 337580..338110(+) (ssb) [Enterobacter asburiae strain FAHZZU5722]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTAGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCGCTGAGAAGTACACCACAGAAGTCGTGGTCAACGTGGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A263VT06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.773
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364