Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RQP59_RS22985 Genome accession   NZ_CP135253
Coordinates   4704043..4705563 (+) Length   506 a.a.
NCBI ID   WP_217480771.1    Uniprot ID   A0AA96M4Q5
Organism   Enterobacter chuandaensis strain FAHZZU5885     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4699043..4710563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQP59_RS22960 (RQP59_22935) ilvE 4700609..4701538 (-) 930 WP_023326297.1 branched-chain-amino-acid transaminase -
  RQP59_RS22965 (RQP59_22940) ilvM 4701557..4701820 (-) 264 WP_100122902.1 acetolactate synthase 2 small subunit -
  RQP59_RS22970 (RQP59_22945) ilvG 4701817..4703463 (-) 1647 WP_265195604.1 acetolactate synthase 2 catalytic subunit -
  RQP59_RS22975 (RQP59_22950) ilvX 4703466..4703516 (-) 51 WP_207389462.1 peptide IlvX -
  RQP59_RS22980 (RQP59_22955) ilvL 4703603..4703701 (-) 99 WP_001311244.1 ilv operon leader peptide -
  RQP59_RS22985 (RQP59_22960) comM 4704043..4705563 (+) 1521 WP_217480771.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RQP59_RS22990 (RQP59_22965) - 4705589..4705927 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  RQP59_RS22995 (RQP59_22970) hdfR 4706046..4706867 (+) 822 WP_080330350.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55079.11 Da        Isoelectric Point: 7.3597

>NTDB_id=886316 RQP59_RS22985 WP_217480771.1 4704043..4705563(+) (comM) [Enterobacter chuandaensis strain FAHZZU5885]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLKTNRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTDRLG
ESSAHVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNGEDAVWLEETLTRFGLSIRAWQRLLKVARTIADVEGCADI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=886316 RQP59_RS22985 WP_217480771.1 4704043..4705563(+) (comM) [Enterobacter chuandaensis strain FAHZZU5885]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAGGCTCCGCTTATTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCAGGACTCACGCTTGTCGGGCTACCGGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCCAAAGAGGGGGGACGA
TACGATTTACCTATCGCGATTGCGCTTCTCGCGGCTTCTGAGCAGCTTAAGACGAACAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTTACAGGCGCATTAAGAGGCGTTCCCGGTGCAATATCAGGTGCGCTGGAAGCAATACGCGCAGGAC
GGCAAATCATTGTCGCCAATGAAAACGCTTCAGAAGTGAGTCTTATTGCAGAGAAGGGATGCCTCATCGCGGGGCATCTT
CAGGAAGTGTGTGCCTGGCTTGAAGGGCGTCATGAACTGTCCGAGCCGGAAGAGTGCGACGAGGCTATAGCGGATGCGCC
AGAAGATCTCAGCGAGATCATGGGACAAGAGCAAGGGAAGCGTGCTCTGGAAATTACGGCAGCAGGCGGACACAATCTTC
TGCTGATTGGTCCGCCGGGTACGGGCAAAACCATGCTGGCGAGCAGGCTGAGCGGGCTGCTACCGCCGCTTAATAACCAT
GAAGCGCTGGAAAGCGCTGCCATTTATAGTCTTATCAGTTCGACGTCGTTGCATAAACAGTGGCGTCGACGTCCCTTTCG
TTCACCGCATCATAGCGCGTCACTGACGGCAATGGTCGGCGGTGGGTCTATTCCGGGGCCGGGAGAGATCTCACTGGCAC
ACAACGGCATTCTGTTTCTCGATGAGCTACCTGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGGGAACCCATTGAATCG
GGTGAGATACATATTTCACGCACGCGAGCCAAAATAAGCTATCCCGCCCGTTTTCAGCTCGTGGCGGCGATGAACCCCAG
CCCGACGGGGCATTATCAGGGCAATCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAACTCTCCGGTC
CATTTCTCGACCGTTTCGATTTATCACTGGAAATCCCGCTTCCACCGCCGGGTCTGCTCAGGCAGACGGATAGGCTCGGT
GAAAGCTCCGCGCATGTTCGCGAGCGGGTTATCGCGGCACAGGCGCGACAGTACGCTCGTCAAAACAGGCTGAATGCACG
GCTGGATAATGCCGGGATCCGACAGTTTTGTTCTCTTAACGGTGAAGATGCTGTGTGGCTGGAGGAGACGTTGACGCGCT
TTGGGCTTTCCATACGTGCGTGGCAGCGTTTATTAAAAGTGGCCAGAACCATTGCGGACGTGGAGGGATGTGCCGACATT
GAGAGGAAACACTTGCAGGAGGCGCTGAGCTATCGCGCTATCGATCGTTTGCTGCTGCATCTGCAGAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio campbellii strain DS40M4

58.847

99.407

0.585
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.314

100

0.447