Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RQP59_RS01915 Genome accession   NZ_CP135253
Coordinates   400885..401415 (+) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter chuandaensis strain FAHZZU5885     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 395885..406415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQP59_RS01895 (RQP59_01890) aphA 396209..396922 (+) 714 WP_218728214.1 acid phosphatase AphA -
  RQP59_RS01900 (RQP59_01895) - 397035..397451 (+) 417 WP_119916566.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RQP59_RS01905 (RQP59_01900) - 397454..397807 (+) 354 WP_014882150.1 MmcQ/YjbR family DNA-binding protein -
  RQP59_RS01910 (RQP59_01905) uvrA 397811..400633 (-) 2823 WP_045328845.1 excinuclease ABC subunit UvrA -
  RQP59_RS01915 (RQP59_01910) ssb 400885..401415 (+) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RQP59_RS01920 (RQP59_01915) - 401476..401757 (-) 282 WP_008503385.1 YjcB family protein -
  RQP59_RS01925 (RQP59_01920) - 402381..403946 (+) 1566 WP_322921397.1 EAL domain-containing protein -
  RQP59_RS01930 (RQP59_01925) soxS 403953..404279 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  RQP59_RS01935 (RQP59_01930) soxR 404378..404836 (+) 459 WP_119916568.1 redox-sensitive transcriptional activator SoxR -
  RQP59_RS01940 (RQP59_01935) - 405158..405829 (+) 672 WP_252003084.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=886297 RQP59_RS01915 WP_006810470.1 400885..401415(+) (ssb) [Enterobacter chuandaensis strain FAHZZU5885]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=886297 RQP59_RS01915 WP_006810470.1 400885..401415(+) (ssb) [Enterobacter chuandaensis strain FAHZZU5885]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTAAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCTGGCGGTGGTCAGAACCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCACAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGACTTCGACGACGACATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369