Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RQR13_RS02295 Genome accession   NZ_CP135194
Coordinates   455608..457137 (+) Length   509 a.a.
NCBI ID   WP_250012040.1    Uniprot ID   -
Organism   Pasteurella multocida strain 102426     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 450608..462137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQR13_RS02265 - 450839..452359 (+) 1521 WP_170352996.1 surface lipoprotein assembly modifier -
  RQR13_RS02270 - 452414..452740 (-) 327 WP_005757699.1 HigA family addiction module antitoxin -
  RQR13_RS02275 - 452869..453195 (-) 327 WP_005725755.1 type II toxin-antitoxin system RelE/ParE family toxin -
  RQR13_RS02280 trmL 453353..453829 (+) 477 WP_170352998.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  RQR13_RS02285 - 453903..454772 (-) 870 WP_170353000.1 VirK/YbjX family protein -
  RQR13_RS02290 yihA 454883..455500 (+) 618 WP_005724253.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RQR13_RS02295 comM 455608..457137 (+) 1530 WP_250012040.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RQR13_RS02300 - 457203..457889 (-) 687 WP_015690949.1 hypothetical protein -
  RQR13_RS02305 - 457910..458752 (-) 843 WP_015690948.1 divergent polysaccharide deacetylase family protein -
  RQR13_RS02310 envC 458749..459978 (-) 1230 WP_170352211.1 murein hydrolase activator EnvC -
  RQR13_RS02315 - 460161..460844 (+) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55948.38 Da        Isoelectric Point: 9.6874

>NTDB_id=886128 RQR13_RS02295 WP_250012040.1 455608..457137(+) (comM) [Pasteurella multocida strain 102426]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHSTLPLASDLPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLIHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=886128 RQR13_RS02295 WP_250012040.1 455608..457137(+) (comM) [Pasteurella multocida strain 102426]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCTCAATTTAAATACCCTGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGACCCACAAAAGTTACAGCAATTTGAATTTGT
GGGTGAGTTAGCACTAACTGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATCATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATTCCACGTTACCTTTAGCCTCAGACCTGCCTACACAACATGATCCAGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCCTTAACCATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGTCCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTATTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTTCGTGCCCCTCATCACAGCGCTTCAACACCAGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGTG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTCGATGAGTTACCAGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTTCCTGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACAGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGGGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGTGCGGG
AAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATGCCACCTCGCCGAAGCACTGGGTTATCGGGCGATGGATAGGCTGTTACAGAAGTTATC
TGCGATGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.283

100

0.843
  comM Glaesserella parasuis strain SC1401

77.712

99.607

0.774
  comM Vibrio cholerae strain A1552

66.208

100

0.662
  comM Vibrio campbellii strain DS40M4

65.748

99.804

0.656
  comM Legionella pneumophila str. Paris

51.6

98.232

0.507
  comM Legionella pneumophila strain ERS1305867

51.6

98.232

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47