Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RPE50_RS24685 Genome accession   NZ_CP135186
Coordinates   5171581..5173101 (+) Length   506 a.a.
NCBI ID   WP_002883134.1    Uniprot ID   A0A0H3GGF6
Organism   Klebsiella pneumoniae strain VA585-22     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5166581..5178101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPE50_RS24665 (RPE50_24665) ilvE 5168141..5169070 (-) 930 WP_315569911.1 branched-chain-amino-acid transaminase -
  RPE50_RS24670 (RPE50_24670) ilvM 5169087..5169344 (-) 258 WP_002883170.1 acetolactate synthase 2 small subunit -
  RPE50_RS24675 (RPE50_24675) ilvG 5169341..5170987 (-) 1647 WP_012737117.1 acetolactate synthase 2 catalytic subunit -
  RPE50_RS27110 ilvX 5170990..5171043 (-) 54 WP_201281575.1 peptide IlvX -
  RPE50_RS24680 (RPE50_24680) ilvL 5171128..5171226 (-) 99 WP_071824223.1 ilv operon leader peptide -
  RPE50_RS24685 (RPE50_24685) comM 5171581..5173101 (+) 1521 WP_002883134.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RPE50_RS24690 (RPE50_24690) - 5173126..5173464 (-) 339 WP_004146520.1 DUF413 domain-containing protein -
  RPE50_RS24695 (RPE50_24695) hdfR 5173583..5174404 (+) 822 WP_002883081.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55187.59 Da        Isoelectric Point: 8.3554

>NTDB_id=886098 RPE50_RS24685 WP_002883134.1 5171581..5173101(+) (comM) [Klebsiella pneumoniae strain VA585-22]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPARDERYEDLLDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGSQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKNCCRLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEVEEI
ERCHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=886098 RPE50_RS24685 WP_002883134.1 5171581..5173101(+) (comM) [Klebsiella pneumoniae strain VA585-22]
ATGTCGCTCGCTATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACCGTTGAGGTTCATCTCAGCAA
CGGTCTTCCTGGTCTAACTATGGTCGGGCTGCCGGAAACCACCGTGAAAGAGGCCCGCGACCGGGTCCGCAGCGCCCTGA
TCAACAGCGGCTACGCTTTTCCTGCGAAGAAGATAACCATTAACCTGGCGCCAGCGGATCTGCCCAAAGAAGGCGGACGA
TACGATCTGCCCATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGTGGGTTACGAGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCGGAGGTCGGCCTGATCGGCGGCAGCGATTGTCTGGTCGCCGACCATCTG
CAGGAGGTTTGCGCATTTCTTGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCGCCTGCTCGGGATGAACGCTA
CGAAGATCTGCTCGATGTTATCGGCCAGCAGCAGGGCAAACGAGCGCTGGAGATTGTGGCCGCCGGTGGTCACAATCTGC
TCCTGATAGGCCCGCCCGGGACCGGGAAAACCATGCTAGCCAGCCGACTCCCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCGCTGGAGAGCGCGGCCATACAGAGTCTGGTCAACCTCCACACCGCAAAGACGCGGTGGCGTCAGAGGCCGTTCCG
CGCCCCCCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCGGAGTTTGAGCGGCGGGTACTGGATGCGCTACGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATTGCAGCGATGAATCCAAG
CCCGACAGGACATTATCAGGGTAAACATAATCGTGCATCGCCGGAGCAGACATTGCGCTACCTTGGACGCCTGTCAGGCC
CCTTCCTCGACCGCTTCGATCTTTCCTTAGAGATCCCATTGCCACCGCCAGGAATACTGAGTCAGGGCTCGCAGGGCGAA
GAATCGAGCGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGTGAACGACAAATGCTCAGGCAAAATAAACTCAATGCCCA
TCTTGAGAATCGTGAAATGAAGAACTGCTGCCGCTTAAGGCGGGAGGATGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTTTCTATTCGCGCCTGGCAGCGTCTGTTAAAGGTTGCGAGAACCATTGCCGATCTGGCAGAGGTTGAAGAGATT
GAACGCTGTCATTTGCAGGAGGCGCTCAGCTATCGGGCAATAGATCGGATGCTCAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GGF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.078

100

0.607
  comM Glaesserella parasuis strain SC1401

59.725

100

0.601
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Legionella pneumophila str. Paris

50.201

98.419

0.494
  comM Legionella pneumophila strain ERS1305867

50.201

98.419

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.488

100

0.447