Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QYQ95_RS15045 Genome accession   NZ_CP135176
Coordinates   3367631..3369154 (-) Length   507 a.a.
NCBI ID   WP_016801092.1    Uniprot ID   A0AAN0LMX1
Organism   Vibrio cyclitrophicus ZF270     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3362631..3374154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ95_RS15020 (QYQ95_15020) - 3362685..3362948 (+) 264 WP_010433308.1 YihD family protein -
  QYQ95_RS15025 (QYQ95_15025) ccoG 3363276..3364694 (+) 1419 WP_016767534.1 cytochrome c oxidase accessory protein CcoG -
  QYQ95_RS15030 (QYQ95_15030) - 3364769..3365755 (+) 987 WP_010433301.1 serine/threonine protein kinase -
  QYQ95_RS15035 (QYQ95_15035) - 3365811..3366410 (+) 600 WP_010433299.1 thiol:disulfide interchange protein DsbA/DsbL -
  QYQ95_RS15040 (QYQ95_15040) - 3366550..3367503 (+) 954 WP_010433296.1 DUF2860 domain-containing protein -
  QYQ95_RS15045 (QYQ95_15045) comM 3367631..3369154 (-) 1524 WP_016801092.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QYQ95_RS15050 (QYQ95_15050) ilvG 3369626..3371272 (+) 1647 WP_010433260.1 acetolactate synthase 2 catalytic subunit -
  QYQ95_RS15055 (QYQ95_15055) ilvM 3371274..3371558 (+) 285 WP_010433257.1 acetolactate synthase 2 small subunit -
  QYQ95_RS15060 (QYQ95_15060) - 3371571..3372539 (+) 969 WP_016801091.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55594.76 Da        Isoelectric Point: 7.9071

>NTDB_id=885993 QYQ95_RS15045 WP_016801092.1 3367631..3369154(-) (comM) [Vibrio cyclitrophicus ZF270]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADRVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHQADVSVLRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVRQARELMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=885993 QYQ95_RS15045 WP_016801092.1 3367631..3369154(-) (comM) [Vibrio cyclitrophicus ZF270]
ATGGGACTCGCGATAATTCATAGTCGAGCTAGTGTGGGTGTAGAGGCTCCAGAAGTGACAGTCGAGGTGCATATCAGCAA
TGGAATGCCCGGTTTTACGTTGGTGGGTTTACCTGAAACAACGGTCAAGGAATCTAAAGATCGAGTGAGAAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCATCGAAAAGGATCACGGTTAACTTAGCTCCCGCAGATTTACCGAAAGAAGGTGGGCGG
TTTGACTTGCCTATCGCGCTTGGGATTTTAGTTGCGTCGGACCAGTTACCCACATCAAAAATAGCTCAACATGAATTTAT
TGGTGAGTTAGCGCTGTCGGGTGAGTTGCGCTCGGTGAAAGGGGTACTGCCTGCAACACTCGCTGCTGACAGAGTTGAGC
GTTGCTTAGTCGTACCGCATCACAATGGCGATCAGGCAGCTTTAGTCGGTAAAGGGGCACATAAGTCGGCGCAAACCTTG
TTGGAGGTTTGTGCGGATATGTGTGGTCAGGCTCAGCTTGGTCTATATAGAACGGAACATCATCAGGCTGATGTTTCAGT
GCTTCGCGACCTACAAGATATTATCGGCCAACAACAAGGCAAGCGAGCTCTAGAGATAGCCGCTGCTGGGAACCATAATT
TATTGTTCCTCGGCCCGCCCGGAACAGGCAAGACCATGCTCGCTTCTCGACTGCGTGACTTGCTACCTGAAATGAGTGAT
GACGAGGCGATGGAAACCGCGTCGGTGGCCTCGTTAACGCAACAAGAGATCAATCAATACAACTGGAAGCAACGACCTTT
TAGGTCCCCCCATCATTCGAGCTCAATGGCAGCATTGGTGGGTGGTGGTTCGGTGCCTCGCCCTGGTGAGATATCTTTGG
CGCATAACGGGTTATTGTTTCTTGATGAGATGCCTGAGTTTGAGCGCAAGGTACTCGATTCTTTGCGAGAGCCGTTGGAG
TCGGGTGAAATCATTATCTCTCGTGCGGCAGGTAAGACGCGTTTTCCTGCGCGCTTTCAATTAGTCGGTGCACTTAACCC
AAGCCCTACAGGTTATTATGAAGGCAATCAAGCTCGAGCGAACCCACAAATCATCCTTCGCTACCTCAATCGACTATCAG
GGCCGTTATTGGACCGATTCGATATGTCGTTAGAGATCCCCCTGTTGCCCAAAGGGATGTTAGCCGAAGGTGGCGACCGT
GGTGAAACGACTCAAGTCGTAAAGCAAAGGGTCAGGCAGGCTCGTGAGCTGATGCTATCTCGCAATCATAAATCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCGTTAAGACGTGAGGATGCGGAGTTTCTGGAAACGGCATTGCACC
GATTGGGCTTATCGATTCGCGCTTACCACCGGATCATCAAGGTGGCGCGAACCATTGCTGACCTTGACGGTAATGAGCAG
ATTGAAAAGAAGCACCTATCGGAAGCGCTTGGCTATCGAGCCATGGATCGGTTGTTGAAGCAACTCACAGCTCAAGCTGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Vibrio campbellii strain DS40M4

83.629

100

0.836
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

63.333

100

0.637
  comM Legionella pneumophila str. Paris

48.992

97.83

0.479
  comM Legionella pneumophila strain ERS1305867

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.803

0.424