Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ROT04_RS28710 Genome accession   NZ_CP135174
Coordinates   6155885..6157378 (+) Length   497 a.a.
NCBI ID   WP_058200205.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PARM_L1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6150885..6162378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROT04_RS28680 (ROT04_28680) - 6150949..6151863 (-) 915 WP_058354776.1 fimbrial protein -
  ROT04_RS28685 (ROT04_28685) sutA 6152357..6152674 (-) 318 WP_003096440.1 transcriptional regulator SutA -
  ROT04_RS28690 (ROT04_28690) - 6152752..6153177 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ROT04_RS28695 (ROT04_28695) - 6153438..6154766 (-) 1329 WP_003109815.1 ammonium transporter -
  ROT04_RS28700 (ROT04_28700) glnK 6154806..6155144 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  ROT04_RS28705 (ROT04_28705) - 6155584..6155844 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  ROT04_RS28710 (ROT04_28710) comM 6155885..6157378 (+) 1494 WP_058200205.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ROT04_RS28715 (ROT04_28715) betT 6157503..6159488 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  ROT04_RS28720 (ROT04_28720) pchP 6159531..6160580 (-) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  ROT04_RS28725 (ROT04_28725) - 6160731..6161648 (-) 918 WP_003098255.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53084.99 Da        Isoelectric Point: 7.9587

>NTDB_id=885917 ROT04_RS28710 WP_058200205.1 6155885..6157378(+) (comM) [Pseudomonas aeruginosa strain PARM_L1]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEISGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=885917 ROT04_RS28710 WP_058200205.1 6155885..6157378(+) (comM) [Pseudomonas aeruginosa strain PARM_L1]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
TGGCGAACTGGCCCTGTCCGGGGCGATCCGACCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCTCCGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCAGGCACCGGCAAGACCCTCCTGGCCAGCCGCTTGCCCGGCCTGCTGCCAGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAACGACCGTTCCG
CCAACCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTACTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGGTCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAAGCGGCCGGCGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.653

99.799

0.565
  comM Haemophilus influenzae Rd KW20

55.666

100

0.563
  comM Vibrio cholerae strain A1552

56.25

99.799

0.561
  comM Glaesserella parasuis strain SC1401

54.691

100

0.551
  comM Legionella pneumophila str. Paris

49.703

100

0.505
  comM Legionella pneumophila strain ERS1305867

49.703

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.957

100

0.469