Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RNZ41_RS00150 Genome accession   NZ_CP135138
Coordinates   33667..35160 (-) Length   497 a.a.
NCBI ID   WP_314027283.1    Uniprot ID   A0AA96KY69
Organism   Moraxella sp. DOX410     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 28667..40160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ41_RS00125 (RNZ41_00125) - 28742..30013 (+) 1272 WP_314027281.1 TolC family protein -
  RNZ41_RS00130 (RNZ41_00130) pstS 30094..31098 (-) 1005 WP_065253924.1 phosphate ABC transporter substrate-binding protein PstS -
  RNZ41_RS00135 (RNZ41_00135) phoU 31445..32215 (+) 771 WP_060995892.1 phosphate signaling complex protein PhoU -
  RNZ41_RS00140 (RNZ41_00140) - 32356..33090 (+) 735 WP_314027282.1 phosphoglycolate phosphatase -
  RNZ41_RS00145 (RNZ41_00145) - 33077..33637 (+) 561 WP_051500238.1 DUF4385 domain-containing protein -
  RNZ41_RS00150 (RNZ41_00150) comM 33667..35160 (-) 1494 WP_314027283.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RNZ41_RS00155 (RNZ41_00155) hemN 35369..36847 (+) 1479 WP_314027284.1 oxygen-independent coproporphyrinogen III oxidase -
  RNZ41_RS00160 (RNZ41_00160) - 36860..37327 (+) 468 WP_314027285.1 hypothetical protein -
  RNZ41_RS00165 (RNZ41_00165) - 37349..37561 (+) 213 WP_128681029.1 hypothetical protein -
  RNZ41_RS00170 (RNZ41_00170) - 37723..38328 (+) 606 WP_314027286.1 class I SAM-dependent methyltransferase -
  RNZ41_RS00175 (RNZ41_00175) - 38339..38920 (-) 582 WP_314027287.1 DUF4442 domain-containing protein -
  RNZ41_RS00180 (RNZ41_00180) - 39027..39410 (+) 384 WP_051500239.1 HNH endonuclease -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53825.26 Da        Isoelectric Point: 8.0027

>NTDB_id=885537 RNZ41_RS00150 WP_314027283.1 33667..35160(-) (comM) [Moraxella sp. DOX410]
MSFAQVYTRSVVGLNAPSVMVEVHLSQGLPAVTIVGLPEAAVRESKDRVRSAIINSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASGQIDETVLAQYEFIGELALNGDLRGIAGALAVSRALKAAQRTLIVPKDNADEAVKVDGVKVLQADTL
KAVCQHLMNEQQLSQAEHKTSYQSANYQLDLADVKGQHQARRALEIAAAGGHSLLFCGSPGTGKTLMASRLPTILPPLND
HEALEVASIYSIANSDYDYGTRPFRQVHHTTSAVALVGGGSSPKPGEITLANRGVLFLDEIPEFDRKVLEVLRQPIENKE
IVISRANSQVRFPANFQLVAAMNPCPCGYYGDKSGRCQCRPEQIKRYQEKLSGPLLDRIDLHITVPALPASDLQSAQRGE
SSAVVRERVIQAYQRQQARQGKANNELSPSELDQFAPLGDAESRILAMAQSRLNLSARGYHRVLRVARTIADLAGSEAIQ
TAHLTEALSYRSQLTNA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=885537 RNZ41_RS00150 WP_314027283.1 33667..35160(-) (comM) [Moraxella sp. DOX410]
ATGTCGTTTGCTCAAGTATATACGCGCTCGGTGGTAGGTTTAAACGCGCCAAGCGTGATGGTTGAAGTACATTTATCGCA
AGGATTGCCTGCAGTCACCATAGTGGGCTTGCCTGAAGCCGCGGTACGCGAGAGTAAAGATAGGGTGCGCTCTGCCATTA
TCAACTCGGGTTTTCAATTTCCCAATCGCAGATTAACTATCAACCTTGCCCCCGCGGATTTACCCAAAGATGGCGCACGG
CTTGATTTGCCCATTGCCATAGGCATCTTGGCAGCGAGTGGTCAAATTGATGAAACCGTGCTTGCGCAGTACGAATTTAT
TGGCGAATTGGCACTCAATGGCGATTTACGAGGCATTGCTGGTGCGTTGGCAGTATCACGAGCACTCAAGGCGGCGCAGC
GCACCTTGATTGTTCCCAAAGACAATGCCGATGAAGCGGTCAAAGTCGATGGCGTGAAGGTGTTGCAAGCCGATACCCTC
AAAGCTGTGTGCCAACACTTGATGAACGAGCAACAACTTAGCCAAGCCGAGCATAAAACATCTTACCAATCAGCCAATTA
TCAGCTAGATTTAGCCGATGTCAAAGGACAACACCAAGCCAGACGTGCGCTAGAGATTGCGGCAGCGGGCGGACATTCGC
TACTATTTTGTGGCTCACCTGGGACAGGCAAAACCTTGATGGCATCTCGCCTACCCACCATTTTGCCACCGCTCAACGAC
CATGAAGCGCTTGAAGTTGCCAGCATCTATTCGATTGCCAACAGTGATTATGACTACGGCACACGCCCTTTTCGCCAAGT
CCATCATACTACTTCAGCAGTGGCGCTCGTGGGCGGCGGCTCATCGCCCAAACCCGGTGAAATCACGCTCGCCAATCGGG
GAGTGTTATTTTTGGATGAGATTCCAGAGTTTGATCGCAAGGTGCTTGAGGTACTCAGACAGCCCATCGAGAACAAAGAA
ATTGTCATCAGCCGTGCCAACTCTCAAGTACGCTTTCCCGCCAATTTTCAGCTGGTAGCAGCGATGAATCCCTGCCCCTG
TGGCTACTATGGGGATAAATCAGGTCGCTGCCAGTGCCGACCCGAGCAAATCAAACGCTATCAAGAAAAACTATCAGGAC
CTTTGCTGGACCGTATTGATTTGCATATTACCGTGCCTGCCCTGCCTGCCAGTGATTTGCAGTCAGCACAAAGGGGTGAA
TCTTCTGCGGTAGTGCGTGAGCGGGTGATACAAGCCTATCAGCGTCAGCAAGCCAGACAGGGCAAAGCCAATAATGAACT
CTCCCCCAGTGAACTTGACCAATTTGCGCCGCTTGGCGATGCAGAAAGTCGTATTTTGGCAATGGCACAAAGTCGGTTGA
ATCTGTCCGCGCGCGGCTATCATCGCGTCCTTCGCGTCGCCCGCACGATTGCGGACTTGGCAGGTAGTGAAGCAATCCAA
ACCGCGCATTTAACTGAGGCATTAAGTTATCGTAGTCAATTAACGAATGCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.226

99.799

0.531
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Vibrio campbellii strain DS40M4

53.024

99.799

0.529
  comM Haemophilus influenzae Rd KW20

51.793

100

0.523
  comM Legionella pneumophila str. Paris

51.102

100

0.513
  comM Legionella pneumophila strain ERS1305867

51.102

100

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.533

100

0.451