Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RPB40_RS01655 Genome accession   NZ_CP135117
Coordinates   344403..344933 (+) Length   176 a.a.
NCBI ID   WP_006177466.1    Uniprot ID   A0AAE4E8Q4
Organism   Enterobacter hormaechei strain F2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 339403..349933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPB40_RS01635 (RPB40_01635) aphA 339726..340439 (+) 714 WP_017382626.1 acid phosphatase AphA -
  RPB40_RS01640 (RPB40_01640) - 340553..340969 (+) 417 WP_017382627.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RPB40_RS01645 (RPB40_01645) - 340972..341325 (+) 354 WP_017382628.1 MmcQ/YjbR family DNA-binding protein -
  RPB40_RS01650 (RPB40_01650) uvrA 341329..344151 (-) 2823 WP_015570187.1 excinuclease ABC subunit UvrA -
  RPB40_RS01655 (RPB40_01655) ssb 344403..344933 (+) 531 WP_006177466.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RPB40_RS01660 (RPB40_01660) - 344995..345276 (-) 282 WP_003860282.1 YjcB family protein -
  RPB40_RS01665 (RPB40_01665) - 345720..347120 (+) 1401 WP_032103688.1 sensor domain-containing diguanylate cyclase -
  RPB40_RS01670 (RPB40_01670) - 347386..348951 (+) 1566 WP_032103689.1 EAL domain-containing protein -
  RPB40_RS01675 (RPB40_01675) soxS 348958..349284 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  RPB40_RS01680 (RPB40_01680) soxR 349383..349841 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18835.84 Da        Isoelectric Point: 5.2456

>NTDB_id=885453 RPB40_RS01655 WP_006177466.1 344403..344933(+) (ssb) [Enterobacter hormaechei strain F2]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=885453 RPB40_RS01655 WP_006177466.1 344403..344933(+) (ssb) [Enterobacter hormaechei strain F2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAATGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAATCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364