Detailed information NTG0884968

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: RMQ61_RS00855
• Genome accession: NZ_CP135090
• Coordinates: 137416..137850 (+)
• Length: 144 a.a.
• NCBI ID: WP_024395445.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ID48908
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 132416..142850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMQ61_RS00820 (RMQ61_00820)	tnpA	132855..133329 (-)	475	Protein_127	IS200/IS605 family transposase	-
RMQ61_RS00825 (RMQ61_00825)	-	133558..134508 (-)	951	WP_313920908.1	LD-carboxypeptidase	-
RMQ61_RS00830 (RMQ61_00830)	comYA	134594..135544 (+)	951	WP_105140681.1	competence type IV pilus ATPase ComGA	Machinery gene
RMQ61_RS00835 (RMQ61_00835)	comYB	135456..136493 (+)	1038	WP_313921433.1	competence type IV pilus assembly protein ComGB	Machinery gene
RMQ61_RS00840 (RMQ61_00840)	comYC	136495..136776 (+)	282	WP_313920909.1	competence type IV pilus major pilin ComGC	Machinery gene
RMQ61_RS00845 (RMQ61_00845)	comGD	136757..137164 (+)	408	WP_313920910.1	competence type IV pilus minor pilin ComGD	-
RMQ61_RS00850 (RMQ61_00850)	comYE	137136..137429 (+)	294	WP_024413203.1	competence type IV pilus minor pilin ComGE	Machinery gene
RMQ61_RS00855 (RMQ61_00855)	comGF/cglF	137416..137850 (+)	435	WP_024395445.1	competence type IV pilus minor pilin ComGF	Machinery gene
RMQ61_RS00860 (RMQ61_00860)	comGG	137828..138355 (+)	528	WP_313920911.1	competence type IV pilus minor pilin ComGG	-
RMQ61_RS00865 (RMQ61_00865)	comYH	138411..139364 (+)	954	WP_105105703.1	class I SAM-dependent methyltransferase	Machinery gene
RMQ61_RS00870 (RMQ61_00870)	-	139414..140601 (+)	1188	WP_313920912.1	acetate kinase	-
RMQ61_RS00875 (RMQ61_00875)	-	140677..141540 (-)	864	WP_313926416.1	IS982 family transposase	-
RMQ61_RS00880 (RMQ61_00880)	-	141885..142436 (+)	552	WP_313926417.1	folate family ECF transporter S component	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16433.77 Da
• Isoelectric Point: 6.9832

>NTDB_id=884968 RMQ61_RS00855 WP_024395445.1 137416..137850(+) (comGF/cglF) [Streptococcus suis strain ID48908]
MLKSKIPAFTLLECLVALIILSGSLLVFEGLSKLLVQEAHYQGQTVQKEWLVFSSQLRSEWDQAELVKVENGKVYVNKGE
QALAFGKSRSDDFRKTNDRGQGYQPMLYQVDSAAISQENQLVRIDFSFKNGEERTFIYAFKEKS

Nucleotide

• Length: 435 bp

>NTDB_id=884968 RMQ61_RS00855 WP_024395445.1 137416..137850(+) (comGF/cglF) [Streptococcus suis strain ID48908]
TTGTTAAAAAGTAAAATTCCTGCTTTTACTCTCTTGGAATGCTTGGTAGCTTTAATCATCCTATCAGGAAGTCTTCTGGT
CTTTGAAGGCTTGTCAAAACTGCTGGTCCAAGAAGCGCATTATCAAGGTCAGACCGTTCAAAAGGAATGGTTGGTCTTCT
CTAGTCAATTGCGGTCGGAGTGGGACCAGGCTGAATTGGTCAAGGTTGAAAATGGCAAGGTCTATGTCAACAAAGGTGAA
CAGGCTTTGGCCTTTGGCAAGTCACGGTCGGATGATTTTCGGAAAACAAATGATAGAGGCCAGGGTTACCAACCCATGCT
CTATCAGGTGGACAGCGCAGCCATTTCCCAAGAAAACCAGCTGGTGCGTATTGACTTTAGCTTTAAAAATGGAGAGGAGC
GGACCTTTATCTATGCTTTTAAAGAAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (37-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus pneumoniae TIGR4	53.901	97.917	0.528
comGF/cglF	Streptococcus pneumoniae Rx1	53.901	97.917	0.528
comGF/cglF	Streptococcus pneumoniae D39	53.901	97.917	0.528
comGF/cglF	Streptococcus pneumoniae R6	53.901	97.917	0.528
comGF/cglF	Streptococcus mitis NCTC 12261	54.478	93.056	0.507
comYF	Streptococcus mutans UA140	50	100	0.5
comYF	Streptococcus mutans UA159	49.306	100	0.493
comGF/cglF	Streptococcus mitis SK321	51.493	93.056	0.479
comGF	Lactococcus lactis subsp. cremoris KW2	46.809	97.917	0.458