Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | RMQ61_RS00865 | Genome accession | NZ_CP135090 |
| Coordinates | 138411..139364 (+) | Length | 317 a.a. |
| NCBI ID | WP_105105703.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain ID48908 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 133411..144364
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RMQ61_RS00825 (RMQ61_00825) | - | 133558..134508 (-) | 951 | WP_313920908.1 | LD-carboxypeptidase | - |
| RMQ61_RS00830 (RMQ61_00830) | comYA | 134594..135544 (+) | 951 | WP_105140681.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RMQ61_RS00835 (RMQ61_00835) | comYB | 135456..136493 (+) | 1038 | WP_313921433.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| RMQ61_RS00840 (RMQ61_00840) | comYC | 136495..136776 (+) | 282 | WP_313920909.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RMQ61_RS00845 (RMQ61_00845) | comGD | 136757..137164 (+) | 408 | WP_313920910.1 | competence type IV pilus minor pilin ComGD | - |
| RMQ61_RS00850 (RMQ61_00850) | comYE | 137136..137429 (+) | 294 | WP_024413203.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| RMQ61_RS00855 (RMQ61_00855) | comGF/cglF | 137416..137850 (+) | 435 | WP_024395445.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| RMQ61_RS00860 (RMQ61_00860) | comGG | 137828..138355 (+) | 528 | WP_313920911.1 | competence type IV pilus minor pilin ComGG | - |
| RMQ61_RS00865 (RMQ61_00865) | comYH | 138411..139364 (+) | 954 | WP_105105703.1 | class I SAM-dependent methyltransferase | Machinery gene |
| RMQ61_RS00870 (RMQ61_00870) | - | 139414..140601 (+) | 1188 | WP_313920912.1 | acetate kinase | - |
| RMQ61_RS00875 (RMQ61_00875) | - | 140677..141540 (-) | 864 | WP_313926416.1 | IS982 family transposase | - |
| RMQ61_RS00880 (RMQ61_00880) | - | 141885..142436 (+) | 552 | WP_313926417.1 | folate family ECF transporter S component | - |
| RMQ61_RS00885 (RMQ61_00885) | - | 142492..143748 (+) | 1257 | WP_313920915.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35760.84 Da Isoelectric Point: 4.4133
>NTDB_id=884969 RMQ61_RS00865 WP_105105703.1 138411..139364(+) (comYH) [Streptococcus suis strain ID48908]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETDLVVKNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETDLVVKNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=884969 RMQ61_RS00865 WP_105105703.1 138411..139364(+) (comYH) [Streptococcus suis strain ID48908]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGCACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGACGGACCTTGTTGTCAAAAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTATCAATTCTTGCTTATCAAGGCCAATCAGACT
GAACCCATGCAGTATAATCACCAGTTCACACCAGACTCCATCGGATTTATCCTATCTTTTTTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCCAGCCGTTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGCACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAGCATGAGACGGACCTTGTTGTCAAAAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTATCAATTCTTGCTTATCAAGGCCAATCAGACT
GAACCCATGCAGTATAATCACCAGTTCACACCAGACTCCATCGGATTTATCCTATCTTTTTTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCCAGCCGTTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.443 |
99.685 |
0.603 |
| comYH | Streptococcus mutans UA159 |
60.127 |
99.685 |
0.599 |