Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   RMP65_RS00355 Genome accession   NZ_CP135089
Coordinates   59037..59936 (+) Length   299 a.a.
NCBI ID   WP_015646238.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 54037..64936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS00325 (RMP65_00325) - 54161..55030 (-) 870 WP_313680565.1 cysteine ABC transporter substrate-binding protein -
  RMP65_RS00330 (RMP65_00330) - 55044..55790 (-) 747 WP_044677099.1 amino acid ABC transporter ATP-binding protein -
  RMP65_RS00335 (RMP65_00335) - 55795..56472 (-) 678 WP_044677097.1 amino acid ABC transporter permease -
  RMP65_RS00340 (RMP65_00340) - 56453..57112 (-) 660 WP_044677125.1 amino acid ABC transporter permease -
  RMP65_RS00345 (RMP65_00345) ruvB 57240..58241 (+) 1002 WP_004195448.1 Holliday junction branch migration DNA helicase RuvB -
  RMP65_RS00350 (RMP65_00350) - 58309..58932 (+) 624 WP_024414287.1 HAD-IA family hydrolase -
  RMP65_RS00355 (RMP65_00355) comR 59037..59936 (+) 900 WP_015646238.1 helix-turn-helix domain-containing protein Regulator
  RMP65_RS00360 (RMP65_00360) - 60144..61364 (+) 1221 WP_313680566.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  RMP65_RS00365 (RMP65_00365) - 61555..63078 (+) 1524 WP_313680567.1 quinol oxidase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35175.03 Da        Isoelectric Point: 4.5398

>NTDB_id=884904 RMP65_RS00355 WP_015646238.1 59037..59936(+) (comR) [Streptococcus suis strain ID34567]
MNDKEFGQRVRQLRENASLTREQFCDDELELSVRQLTRIEAGTSKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLK
FDVLRTPTYGNEELVEKRDAIMTEIYDDYYDDLPEEEKIAIDAIQSRIDTLESGTAGFGKEILEDYFEQIFRKQKYEVND
LLIIRLQLEYVRLSSSDSEIFGQFLKIIEYLHGQIDIINSSDLFVLRDTLLSCVNILGSKKYYEPIPKIFDSVDKIIQST
QDFQKKPIVSVLKWKYALFVNKDRGEAEKHYLDAMLFAKLIENRELEQKIEEDWKVDNQ

Nucleotide


Download         Length: 900 bp        

>NTDB_id=884904 RMP65_RS00355 WP_015646238.1 59037..59936(+) (comR) [Streptococcus suis strain ID34567]
ATGAACGATAAGGAATTTGGACAACGTGTACGTCAACTTCGAGAAAACGCTAGTCTGACACGTGAACAGTTTTGCGATGA
CGAACTTGAGCTCTCCGTCCGCCAATTAACCCGTATCGAAGCAGGTACTTCTAAGCCGACTTTTTCAAAAATCCAATATA
TCGCAACCCGCTTAGGCATGGGGCTCTATGAGCTTATGCCTGATTATGTATCCTTGCCAGAAAGATACTCCAAGCTGAAA
TTTGATGTCCTCCGTACACCGACTTATGGTAATGAGGAATTAGTTGAAAAACGTGATGCTATCATGACGGAAATCTATGA
TGATTATTACGACGACTTGCCTGAGGAGGAGAAAATAGCGATTGATGCCATTCAATCCCGAATTGATACCTTAGAGTCAG
GGACAGCAGGCTTTGGAAAAGAGATACTGGAAGATTACTTTGAACAAATTTTCCGAAAACAAAAGTACGAAGTGAATGAT
TTGCTGATTATTAGGCTCCAGCTTGAATACGTTAGATTGTCCAGTAGTGACTCAGAAATATTTGGACAGTTTTTGAAAAT
TATAGAATATTTACATGGACAAATTGATATTATCAATTCAAGTGATTTATTTGTTCTAAGAGATACATTGTTATCTTGTG
TAAACATTTTGGGAAGTAAAAAATATTATGAACCAATACCAAAGATATTCGACAGTGTAGATAAAATTATACAGTCAACG
CAAGATTTTCAGAAAAAGCCAATTGTCAGTGTGTTGAAATGGAAGTATGCACTTTTTGTAAATAAGGATAGAGGTGAGGC
TGAAAAGCATTATCTAGATGCGATGCTATTTGCAAAATTGATAGAAAATAGAGAGTTAGAGCAGAAGATTGAAGAAGATT
GGAAAGTTGACAATCAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_31)

(5-60)

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

92.977

100

0.93
  comR Streptococcus suis 05ZYH33

92.977

100

0.93
  comR Streptococcus suis D9

59.801

100

0.602
  comR Streptococcus mutans UA159

45.151

100

0.452
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

37.801

97.324

0.368
  comR Streptococcus pyogenes MGAS315

37.037

99.331

0.368