Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   RMP67_RS03935 Genome accession   NZ_CP135087
Coordinates   777840..780077 (+) Length   745 a.a.
NCBI ID   WP_313921215.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 772840..785077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS03910 (RMP67_03910) - 772910..773839 (-) 930 WP_024382739.1 ABC transporter substrate-binding protein -
  RMP67_RS03915 (RMP67_03915) - 773836..774636 (-) 801 WP_044668132.1 ABC transporter ATP-binding protein -
  RMP67_RS03920 (RMP67_03920) - 774788..776233 (-) 1446 WP_313921214.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  RMP67_RS03925 (RMP67_03925) - 776379..777125 (+) 747 WP_014735985.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  RMP67_RS03930 (RMP67_03930) comEA/celA/cilE 777194..777856 (+) 663 WP_052502260.1 helix-hairpin-helix domain-containing protein Machinery gene
  RMP67_RS03935 (RMP67_03935) comEC/celB 777840..780077 (+) 2238 WP_313921215.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RMP67_RS03940 (RMP67_03940) holA 780173..781204 (+) 1032 WP_313921216.1 DNA polymerase III subunit delta -
  RMP67_RS03945 (RMP67_03945) sodA 781317..781922 (+) 606 WP_013730459.1 superoxide dismutase SodA -
  RMP67_RS03950 (RMP67_03950) - 782186..784210 (+) 2025 WP_313921217.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84092.00 Da        Isoelectric Point: 7.0411

>NTDB_id=884874 RMP67_RS03935 WP_313921215.1 777840..780077(+) (comEC/celB) [Streptococcus suis strain ID26102]
MSRLTKLPCQPIHLALLAVAAYFAVHSFSLLTMGLLSLLLVVFGVRQGKTVFIKTLPLLALCGLFFGCQKVQWERSDQSA
PEQVTTVQVIPDTIDINGDSLSFRGRADGQTYQVFYKLASQEEQAYFQKLIDLVQLEVEAEVSLPAGQRNFKGFDYQAYL
KTQGIYRTVEITEIKKISPVQSWNVFDWLSSWRRQALVYVKTNFPAPMSHYMTGLLFGDLDSEFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWMLLRLGLTKETVDKLQIPFSLVYAGLTGFSVSVVRSLVQKILGNMGLRKLDNFAVTVFVCLLIL
PRFLLTAGGVLTFTYAFLLTVFDFEDLGQVKKAAVESLSISLGILPVLMTYFYAFQPLSILLTFVFSFVFDVLLLPGLSV
IFLLSPVVKMTWVNGFFVFMEKIIVWVADLGLRPWILGKPSELVLLLLLVSLFLLYDFHRRKKWLLGLSLVLALLFFITK
HPLENEVTVLDIGQGDSIFLRDMRGRTVLIDVGGRVDFAAKEAWQERSRQANAERTLIPYLHSRGVDRIDSLVLTHTDTD
HVGDVLEVAKQVQIGRIVVSPGSLTVPDFVATLKKINVPVHVVKVGDRLPIFDSYLEVLYPDGTGDGGNNDSIVLYGRLL
KTNFLFTGDLEQGELDLIETYSNLPVDVLKAGHHGSKGSSYPEFLDHIEAKIALVSAGENNRYKHPHQETLDRFDSRNIQ
VYRTDQQGAIRFRGWKEWKIETVRE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=884874 RMP67_RS03935 WP_313921215.1 777840..780077(+) (comEC/celB) [Streptococcus suis strain ID26102]
ATGTCACGGTTGACTAAGCTCCCCTGCCAGCCTATCCACTTGGCTCTTTTGGCGGTGGCGGCCTACTTTGCAGTCCACTC
TTTTTCCCTCTTGACAATGGGCCTGCTGAGTCTGTTACTAGTTGTCTTTGGTGTTCGGCAAGGTAAGACAGTTTTTATCA
AAACGCTGCCGCTTCTAGCCCTGTGTGGTCTCTTTTTCGGATGCCAAAAGGTCCAATGGGAGCGGTCAGACCAGTCAGCC
CCAGAGCAAGTGACAACTGTGCAGGTCATTCCAGATACCATTGACATCAACGGGGACAGTCTGTCCTTTCGCGGTCGGGC
TGACGGACAAACCTATCAGGTGTTCTATAAATTAGCCAGTCAGGAGGAGCAGGCCTATTTTCAAAAGCTGATAGACCTGG
TCCAGCTAGAAGTGGAAGCAGAGGTCAGCCTGCCAGCTGGTCAGCGGAATTTCAAGGGCTTTGACTATCAGGCCTATCTG
AAAACGCAGGGCATTTATCGGACAGTCGAGATTACGGAGATAAAAAAGATATCCCCAGTCCAGTCTTGGAATGTCTTTGA
CTGGTTGTCAAGCTGGCGGAGGCAGGCCTTGGTCTATGTCAAAACCAATTTTCCAGCTCCTATGAGTCACTACATGACAG
GGCTTTTGTTTGGGGACTTGGATAGTGAGTTTGACCAGATGAGTGACCTCTATTCTAGTTTAGGAATCATTCATCTCTTT
GCCCTGTCTGGTATGCAGGTTGGATTTTTCATCGATAAGTTTCGCTGGATGTTACTGCGTTTGGGCTTGACCAAGGAAAC
AGTGGATAAGTTACAAATTCCCTTTTCCCTTGTCTATGCGGGCTTGACAGGTTTTTCCGTGTCGGTGGTGCGATCTTTGG
TTCAGAAAATTCTGGGCAATATGGGCTTGCGGAAGTTGGATAACTTTGCGGTGACAGTCTTTGTCTGTCTGCTGATACTA
CCCCGATTTTTACTGACAGCTGGCGGTGTCTTGACCTTTACCTATGCTTTCTTGCTGACGGTTTTTGATTTTGAGGACTT
GGGGCAGGTCAAAAAGGCTGCGGTGGAAAGTCTCAGTATTTCACTTGGGATTTTGCCAGTGCTTATGACCTATTTCTATG
CCTTTCAGCCTCTATCTATCCTCTTGACCTTTGTCTTTTCCTTTGTCTTTGATGTCCTACTCTTGCCAGGTTTGTCAGTC
ATTTTTCTCCTGTCGCCAGTTGTCAAGATGACTTGGGTCAACGGATTTTTCGTCTTTATGGAGAAAATCATTGTCTGGGT
GGCTGATTTGGGATTGCGGCCTTGGATACTGGGCAAGCCGTCTGAGCTGGTCCTCTTGCTTTTGCTGGTCAGCCTCTTCT
TGCTCTACGATTTCCACAGGAGAAAGAAATGGCTTCTAGGACTGAGCTTGGTCCTCGCTCTGCTATTTTTCATCACCAAA
CACCCGCTGGAAAATGAGGTGACGGTGCTGGACATCGGGCAGGGGGACAGCATCTTTTTGCGGGATATGCGGGGGCGGAC
GGTTCTGATTGATGTAGGCGGACGAGTCGATTTCGCGGCCAAGGAAGCGTGGCAGGAGCGGTCTCGGCAGGCAAATGCAG
AGCGGACTTTGATTCCCTATCTGCATAGTCGGGGTGTGGATAGGATTGATAGTTTAGTCCTGACCCACACCGATACGGAC
CATGTGGGCGATGTGCTGGAAGTGGCGAAGCAGGTCCAGATTGGCCGGATTGTCGTGTCGCCAGGAAGTCTGACGGTGCC
TGACTTTGTAGCAACTCTGAAAAAAATCAATGTGCCTGTCCATGTGGTAAAAGTGGGCGACCGCTTGCCGATTTTTGACT
CTTATCTGGAGGTCCTCTATCCAGATGGGACAGGTGACGGTGGTAATAATGACTCCATTGTCCTTTACGGTCGCTTGCTG
AAAACTAATTTTCTCTTTACAGGGGACTTGGAGCAGGGGGAGTTGGACTTGATAGAAACCTATTCTAACTTGCCTGTTGA
TGTCCTCAAAGCCGGTCACCACGGATCTAAAGGTTCTTCCTATCCTGAATTTTTAGACCATATCGAAGCCAAGATTGCCT
TGGTATCTGCTGGAGAAAACAATCGCTACAAGCATCCCCATCAAGAGACCTTGGACCGCTTTGACAGTCGGAATATCCAA
GTCTATCGTACCGACCAGCAAGGAGCTATTCGATTTAGAGGCTGGAAGGAGTGGAAGATTGAGACGGTGAGGGAGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(493-698)

Domain of unknown function (DUF4131) (DUF4131)

(30-175)

Competence protein (Competence)

(215-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

54.459

99.329

0.541
  comEC/celB Streptococcus mitis NCTC 12261

53.189

98.926

0.526
  comEC/celB Streptococcus pneumoniae TIGR4

52.381

98.658

0.517
  comEC/celB Streptococcus pneumoniae Rx1

52.109

98.658

0.514
  comEC/celB Streptococcus pneumoniae D39

52.109

98.658

0.514
  comEC/celB Streptococcus pneumoniae R6

52.109

98.658

0.514
  comEC Lactococcus lactis subsp. cremoris KW2

48.331

100

0.486