Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RDV63_RS15090 Genome accession   NZ_CP135084
Coordinates   3107527..3109029 (-) Length   500 a.a.
NCBI ID   WP_313910343.1    Uniprot ID   -
Organism   Rheinheimera sp. MMS21-TC3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3102527..3114029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV63_RS15060 (RDV63_15060) - 3102619..3102993 (+) 375 WP_313910335.1 DUF3019 domain-containing protein -
  RDV63_RS15065 (RDV63_15065) - 3102993..3103685 (+) 693 WP_313910336.1 response regulator transcription factor -
  RDV63_RS15070 (RDV63_15070) - 3103695..3104921 (+) 1227 WP_313910337.1 ATP-binding protein -
  RDV63_RS15075 (RDV63_15075) - 3104991..3106172 (+) 1182 WP_313910339.1 multidrug effflux MFS transporter -
  RDV63_RS15080 (RDV63_15080) - 3106169..3106324 (-) 156 WP_313910340.1 hypothetical protein -
  RDV63_RS15085 (RDV63_15085) pyrC 3106474..3107508 (+) 1035 WP_313910341.1 dihydroorotase -
  RDV63_RS15090 (RDV63_15090) comM 3107527..3109029 (-) 1503 WP_313910343.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RDV63_RS15095 (RDV63_15095) - 3109244..3112447 (+) 3204 WP_313910344.1 SNF2-related protein -
  RDV63_RS15100 (RDV63_15100) - 3112516..3113265 (+) 750 WP_313910345.1 endonuclease -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 54506.94 Da        Isoelectric Point: 9.2488

>NTDB_id=884833 RDV63_RS15090 WP_313910343.1 3107527..3109029(-) (comM) [Rheinheimera sp. MMS21-TC3]
MSLAVVYSRARYGLDAPLVTVEVHISNGLPAFQLVGLPETSVKESRDRVRSAMVNSGFAFPDRKITVNLAPADLPKEGGR
FDLPIALGIIVASGQLAEKSLLGFEFCGELALSGEIRPILGEIPVAIACREAKRAIVLPMLNAQQAQQVTNVAVHGADHL
LQVHSFLLAQQALPVIPALPIAPTNLQADLADVKGQAHAKRVLEITAAGEHNLLMLGPAGTGKSMLAQRLPSIMPPLTES
EALATAAIYSIAGLTRNLTDWRQRPFRSPHHTSSAVALVGGGSVPRPGEISLAHHGILFLDELPEFPRKVLDVLREPLET
NKVHISRAARQAEFPAQFQLVAALNPSPTGHHEDGRSSPEQVMRYLNRLSGPFIDRIELQIEVPLLPKGMLSQNSQEESS
ASVRERVLAAREIQIQRQGKANARLNGREIAKYCPLSQADASFLEDTIHRFQLSARTYHKVIKVARTIADLQLKTDINKA
HIMEALSYRALERLLSYLKS

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=884833 RDV63_RS15090 WP_313910343.1 3107527..3109029(-) (comM) [Rheinheimera sp. MMS21-TC3]
ATGTCATTAGCGGTTGTATATAGTCGGGCACGCTATGGTTTAGATGCCCCTTTAGTTACAGTAGAAGTACATATCAGTAA
TGGTTTACCTGCTTTTCAACTTGTAGGATTGCCAGAAACCTCGGTTAAAGAATCTAGAGACAGAGTGCGCAGCGCTATGG
TTAATAGTGGCTTTGCCTTTCCTGATCGGAAAATTACCGTAAACCTAGCGCCGGCAGATTTGCCAAAAGAAGGCGGCCGT
TTTGATTTGCCTATAGCACTGGGGATTATTGTTGCCAGTGGCCAGTTAGCCGAAAAAAGCTTATTAGGTTTTGAGTTTTG
TGGTGAGCTTGCTTTATCGGGCGAGATAAGACCCATTTTAGGTGAAATACCGGTTGCTATAGCTTGCCGAGAAGCTAAAA
GAGCCATAGTGCTACCAATGCTAAATGCCCAACAAGCGCAGCAAGTCACTAATGTTGCCGTGCATGGGGCAGATCACTTA
TTGCAAGTGCATAGCTTTTTGCTTGCTCAGCAAGCTTTACCTGTCATTCCCGCTTTGCCGATTGCCCCAACTAACCTACA
AGCTGATTTAGCCGATGTAAAGGGGCAGGCTCATGCTAAACGAGTATTAGAGATAACAGCTGCTGGTGAGCATAATTTAT
TAATGTTGGGCCCTGCAGGCACTGGCAAATCTATGTTGGCGCAGCGACTGCCTAGCATTATGCCGCCTTTAACTGAATCT
GAGGCCTTAGCAACAGCAGCAATCTATTCCATAGCCGGATTAACCCGCAATTTAACCGATTGGCGGCAGCGGCCATTTCG
TAGTCCGCACCATACTAGCTCTGCTGTAGCTTTAGTGGGTGGTGGCTCAGTGCCAAGGCCTGGTGAAATTTCATTAGCCC
ATCATGGAATTTTATTTTTAGATGAGTTGCCTGAATTCCCGCGAAAAGTGCTAGACGTGCTTCGAGAGCCATTAGAAACC
AACAAAGTTCATATTAGCCGCGCCGCTCGGCAGGCCGAGTTTCCGGCTCAGTTTCAATTAGTAGCGGCTTTAAATCCAAG
CCCTACAGGTCATCATGAAGATGGTCGTTCTTCACCAGAGCAAGTTATGCGCTATTTAAATCGCTTATCAGGGCCTTTTA
TCGATCGGATTGAGTTGCAAATTGAAGTGCCTTTGCTACCCAAAGGCATGTTAAGTCAAAATAGCCAAGAAGAAAGCAGT
GCCAGCGTGCGTGAAAGAGTATTAGCAGCAAGAGAAATCCAAATACAACGCCAAGGCAAAGCTAATGCGAGATTAAATGG
TCGAGAAATTGCTAAGTACTGCCCGTTAAGCCAAGCTGATGCGAGTTTCTTAGAGGATACGATTCATCGTTTTCAGCTGT
CTGCTCGTACTTACCATAAGGTAATAAAAGTGGCGCGTACTATAGCCGATTTACAGTTAAAAACAGATATTAACAAAGCT
CATATTATGGAAGCGCTCAGCTACCGCGCTTTAGAACGGTTGCTGAGCTATTTAAAAAGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(397-489)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-387)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.143

100

0.576
  comM Haemophilus influenzae Rd KW20

55.882

100

0.57
  comM Vibrio campbellii strain DS40M4

55.336

100

0.56
  comM Glaesserella parasuis strain SC1401

55.03

100

0.558
  comM Legionella pneumophila str. Paris

47.379

99.2

0.47
  comM Legionella pneumophila strain ERS1305867

47.379

99.2

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.224

100

0.464