Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RMQ62_RS09405 Genome accession   NZ_CP135065
Coordinates   1948028..1948960 (+) Length   310 a.a.
NCBI ID   WP_024410961.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1943028..1953960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS09390 (RMQ62_09390) - 1944372..1945121 (+) 750 WP_024401788.1 hypothetical protein -
  RMQ62_RS09395 (RMQ62_09395) metG 1945361..1947364 (+) 2004 WP_024410960.1 methionine--tRNA ligase -
  RMQ62_RS09400 (RMQ62_09400) - 1947394..1947960 (-) 567 WP_024391871.1 GNAT family N-acetyltransferase -
  RMQ62_RS09405 (RMQ62_09405) coiA 1948028..1948960 (+) 933 WP_024410961.1 competence protein CoiA Machinery gene
  RMQ62_RS09410 (RMQ62_09410) - 1949014..1949649 (+) 636 WP_024410962.1 hypothetical protein -
  RMQ62_RS09415 (RMQ62_09415) pepF 1949722..1951524 (+) 1803 WP_024410963.1 oligoendopeptidase F Regulator
  RMQ62_RS09420 (RMQ62_09420) - 1951526..1951969 (+) 444 WP_109371646.1 hypothetical protein -
  RMQ62_RS09425 (RMQ62_09425) - 1951980..1952528 (+) 549 WP_109371644.1 DUF6630 family protein -
  RMQ62_RS09430 (RMQ62_09430) - 1952603..1953322 (+) 720 WP_313681037.1 O-methyltransferase -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 36188.85 Da        Isoelectric Point: 8.9831

>NTDB_id=884753 RMQ62_RS09405 WP_024410961.1 1948028..1948960(+) (coiA) [Streptococcus suis strain ID24665]
MLVALDEDRQIFNLLENPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCTYFSENESAQHLSLKSEIYSWLVEKEQ
VELEKCLPKIGQVADLLVNNGLALEVQCSSLPISRLQVRTKAYYDTGYQVVWLLGKDLWLKERLTNLHKQFLTFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHGLTKVFPFGQGNLLDILRLPFAKQTLSSMTCPMDEDLPRYIAQQLYYKSPKWL
ALQAEAYGRGENLLTKTAFDWYPHIRLPRSAIGFAQIRQDLTPIYQAFNQFYDKVENKRKQVLYPPKMYR

Nucleotide


Download         Length: 933 bp        

>NTDB_id=884753 RMQ62_RS09405 WP_024410961.1 1948028..1948960(+) (coiA) [Streptococcus suis strain ID24665]
ATGTTAGTTGCACTTGATGAAGACCGACAAATTTTTAATCTTTTGGAAAATCCTGCGCCACAAGGTCGCTATTCCTGTCC
AGGTTGTGGAGGCCTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCATTTTGCCCATGTCACCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCTGCCCAGCACCTCTCCCTCAAATCAGAGATTTACAGCTGGCTTGTGGAAAAGGAGCAG
GTTGAACTTGAAAAATGCTTGCCAAAAATTGGCCAGGTCGCTGATTTATTGGTCAATAATGGTCTGGCCTTGGAAGTCCA
ATGTTCCAGTCTACCGATTTCTCGTTTGCAGGTGAGAACAAAAGCCTATTATGATACTGGTTATCAAGTTGTCTGGTTGC
TTGGTAAGGATTTATGGCTCAAGGAACGACTGACCAATTTGCACAAGCAATTTCTCACTTTTAGTATGAACATGGGCTTT
CATCTTTGGGAACTAGATGATGAGAAGAAAGAGTTAAGACTCCGTTACCTCATTCATGAAGATTTGCGAGGTAAGGTACA
CGGTCTTACGAAAGTCTTTCCCTTTGGTCAGGGAAACTTACTGGACATATTACGTTTACCTTTTGCCAAGCAAACCCTAT
CTAGCATGACTTGTCCAATGGATGAGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAAATGGCTC
GCCCTGCAAGCAGAGGCTTATGGACGTGGAGAAAATCTACTGACCAAGACAGCATTTGACTGGTATCCCCACATCCGTCT
ACCCCGCTCTGCTATTGGCTTTGCCCAAATTCGCCAAGACCTGACGCCGATTTACCAAGCTTTTAATCAGTTTTACGACA
AAGTGGAAAATAAGAGGAAACAAGTCTTGTATCCACCTAAAATGTATAGATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(22-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.09

100

0.523
  coiA Streptococcus pneumoniae TIGR4

50.804

100

0.51
  coiA Streptococcus pneumoniae Rx1

50.804

100

0.51
  coiA Streptococcus pneumoniae D39

50.804

100

0.51
  coiA Streptococcus pneumoniae R6

50.804

100

0.51
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.432