Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RMQ62_RS09415 Genome accession   NZ_CP135065
Coordinates   1949722..1951524 (+) Length   600 a.a.
NCBI ID   WP_024410963.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1944722..1956524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS09395 (RMQ62_09395) metG 1945361..1947364 (+) 2004 WP_024410960.1 methionine--tRNA ligase -
  RMQ62_RS09400 (RMQ62_09400) - 1947394..1947960 (-) 567 WP_024391871.1 GNAT family N-acetyltransferase -
  RMQ62_RS09405 (RMQ62_09405) coiA 1948028..1948960 (+) 933 WP_024410961.1 competence protein CoiA Machinery gene
  RMQ62_RS09410 (RMQ62_09410) - 1949014..1949649 (+) 636 WP_024410962.1 hypothetical protein -
  RMQ62_RS09415 (RMQ62_09415) pepF 1949722..1951524 (+) 1803 WP_024410963.1 oligoendopeptidase F Regulator
  RMQ62_RS09420 (RMQ62_09420) - 1951526..1951969 (+) 444 WP_109371646.1 hypothetical protein -
  RMQ62_RS09425 (RMQ62_09425) - 1951980..1952528 (+) 549 WP_109371644.1 DUF6630 family protein -
  RMQ62_RS09430 (RMQ62_09430) - 1952603..1953322 (+) 720 WP_313681037.1 O-methyltransferase -
  RMQ62_RS09435 (RMQ62_09435) prsA 1953385..1954386 (+) 1002 WP_109371642.1 peptidylprolyl isomerase PrsA -
  RMQ62_RS09440 (RMQ62_09440) - 1954595..1955080 (+) 486 WP_044668712.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69189.35 Da        Isoelectric Point: 4.5333

>NTDB_id=884754 RMQ62_RS09415 WP_024410963.1 1949722..1951524(+) (pepF) [Streptococcus suis strain ID24665]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEQLEVFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNREVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTTISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=884754 RMQ62_RS09415 WP_024410963.1 1949722..1951524(+) (pepF) [Streptococcus suis strain ID24665]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTGACTACTATTTTCCCAACAGATGAGGCTTGGGA
AGCCGAGTTGGCAGATTTGCAAGCAGAAACAGAAAAAACGAAAGAATTTGCTGGTCACTTGCTAGACTCAGCGAAGAGCC
TTTTGGAAATCAGTGAAACGCAGCTTGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAATGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGTCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAGCTTCTAGCAGCCAAGGACCATGTCCTATCACAAGAGGTAGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCCAGTCTGCGTTTCCCAGAAATCGCAGATGA
AGACGGTCACTTGGTGCCACTTTCACACGGAAACTACATTCACTTTATGGAGTCTAAAAACCGTGAAGTCCGTCAAGAAG
CCTATGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACACTTCAATCTAATGTCAAGGTCAAT
AACCTGAAAGCTCGTTTACGGAAGTACGACTCAGCTCGCCACGCATCACTTGCAGCTAATTTCATTCCAGAATCCGTTTA
TGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCCTAGGTA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCACGATTTCTTATGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAAGATTACTCTGCTATCGTAAAAGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAATTTGGATAATATGTACACCCTTATCCATGAAACAGGCCACTCACTTCATTCTATGTTGACTCGTAAGACT
CAACCTTATGTCTATGGACATTATTCCCTATTCTTGGCTGAAATTGCTTCAACGACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTAAATCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAGCAAGCGATTTACAAGGCAGACCAGGAAGGTCAGGTCTTGACGGCTGATTTC
CTCAATGAATTGTATGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTCGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGATAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATTGCCAAAGCAGGTGTAGACATGACCAAGGAAGATTACCTCAATGATGCTTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.5

100

0.695