Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   RMQ63_RS07745 Genome accession   NZ_CP135063
Coordinates   1599810..1600475 (+) Length   221 a.a.
NCBI ID   WP_313680641.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594810..1605475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS07720 (RMQ63_07720) - 1595021..1596421 (+) 1401 WP_313680638.1 Cof-type HAD-IIB family hydrolase -
  RMQ63_RS07725 (RMQ63_07725) - 1596423..1596794 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  RMQ63_RS07730 (RMQ63_07730) cysK 1596820..1597746 (-) 927 WP_002937015.1 cysteine synthase A -
  RMQ63_RS07735 (RMQ63_07735) - 1597836..1598468 (-) 633 WP_313680639.1 YigZ family protein -
  RMQ63_RS07740 (RMQ63_07740) comFA/cflA 1598525..1599817 (+) 1293 WP_313680640.1 DEAD/DEAH box helicase Machinery gene
  RMQ63_RS07745 (RMQ63_07745) comFC/cflB 1599810..1600475 (+) 666 WP_313680641.1 ComF family protein Machinery gene
  RMQ63_RS07750 (RMQ63_07750) hpf 1600552..1601094 (+) 543 WP_313680642.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25771.56 Da        Isoelectric Point: 8.3778

>NTDB_id=884698 RMQ63_RS07745 WP_313680641.1 1599810..1600475(+) (comFC/cflB) [Streptococcus suis strain ID32563]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSCTCEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNISYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=884698 RMQ63_RS07745 WP_313680641.1 1599810..1600475(+) (comFC/cflB) [Streptococcus suis strain ID32563]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGTGCACCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTTCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae TIGR4

49.541

98.643

0.489
  comFC/cflB Streptococcus pneumoniae Rx1

49.541

98.643

0.489
  comFC/cflB Streptococcus pneumoniae D39

49.541

98.643

0.489
  comFC/cflB Streptococcus pneumoniae R6

49.541

98.643

0.489
  comFC/cflB Streptococcus mitis NCTC 12261

49.541

98.643

0.489