Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OSC47_RS12695 Genome accession   NZ_CP151161
Coordinates   2604153..2604689 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 20220828076     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2599153..2609689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSC47_RS12675 (OSC47_12680) soxR 2600881..2601345 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  OSC47_RS12680 (OSC47_12685) soxS 2601431..2601754 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  OSC47_RS12685 (OSC47_12690) pdeC 2601757..2603343 (-) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  OSC47_RS12690 (OSC47_12695) yjcB 2603773..2604054 (+) 282 WP_001295689.1 YjcB family protein -
  OSC47_RS12695 (OSC47_12700) ssb 2604153..2604689 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OSC47_RS12700 (OSC47_12705) uvrA 2604943..2607765 (+) 2823 WP_044804093.1 excinuclease ABC subunit UvrA Machinery gene
  OSC47_RS12705 (OSC47_12710) yjbR 2607800..2608156 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  OSC47_RS12710 (OSC47_12715) yjbQ 2608160..2608576 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OSC47_RS12715 (OSC47_12720) aphA 2608687..2609400 (-) 714 WP_001315956.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=884606 OSC47_RS12695 WP_000168305.1 2604153..2604689(-) (ssb) [Escherichia coli strain 20220828076]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=884606 OSC47_RS12695 WP_000168305.1 2604153..2604689(-) (ssb) [Escherichia coli strain 20220828076]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489