Detailed information NTG0884607

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: RPB93_RS01490
• Genome accession: NZ_CP135060
• Coordinates: 316601..317950 (+)
• Length: 449 a.a.
• NCBI ID: WP_313755300.1
• Uniprot ID: -
• Organism: Bacillus cereus strain B126_1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 311601..322950

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RPB93_RS01470 (RPB93_01470)	-	312707..313342 (-)	636	WP_313755299.1	YigZ family protein	-
RPB93_RS01475 (RPB93_01475)	-	313579..314421 (+)	843	WP_309305143.1	DegV family protein	-
RPB93_RS01480 (RPB93_01480)	-	314583..314897 (+)	315	WP_000400857.1	helix-turn-helix domain-containing protein	-
RPB93_RS01485 (RPB93_01485)	-	315046..316473 (+)	1428	WP_309305141.1	NlpC/P60 family protein	-
RPB93_RS01490 (RPB93_01490)	comFA	316601..317950 (+)	1350	WP_313755300.1	ATP-dependent helicase ComFA	Machinery gene
RPB93_RS01495 (RPB93_01495)	-	317950..318654 (+)	705	WP_313755301.1	ComF family protein	-
RPB93_RS01500 (RPB93_01500)	cspC	318781..318978 (+)	198	WP_001990088.1	cold shock protein CspC	-
RPB93_RS01505 (RPB93_01505)	hpf	319301..319843 (+)	543	WP_000671185.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
RPB93_RS01510 (RPB93_01510)	secA	320118..322625 (+)	2508	WP_000579387.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51068.03 Da
• Isoelectric Point: 10.0108

>NTDB_id=884607 RPB93_RS01490 WP_313755300.1 316601..317950(+) (comFA) [Bacillus cereus strain B126_1]
MLAGKQLLLEELSSDLQRELNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCAYCRKCITMGRVS
ECAVLVRGIAERKREKNSNLLQWNGKLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMIVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKLKQGKQKGVIVSGRYHRHPLPVPLFCWCGNWKKNLIHKRIPRVLLQWLQTYLNKKFPIFL
FVLHVRYIEEISLLLKPLNNRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=884607 RPB93_RS01490 WP_313755300.1 316601..317950(+) (comFA) [Bacillus cereus strain B126_1]
ATGCTAGCGGGGAAACAGTTGCTGTTAGAAGAGCTTTCTTCAGATTTACAGAGGGAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCGCATATTGCCGAAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGAATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGAAGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGAATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTGCAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACTACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATGATTGTAGATGAGATAGATGCGTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAACTTAAACAAGGTAAACAAAA
AGGTGTTATTGTTTCTGGACGATATCATCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
ACCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAAATTCCCTATTTTTTTA
TTCGTCCTCCATGTGCGATATATAGAAGAAATAAGCTTGTTGTTAAAACCATTAAACAATCGAATTGAAGGTGTACATGC
AGAAGATCCAGGGAGAAAAGAAAAAGTAGCGGCTTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (107-254)

• Helicase conserved C-terminal domain (Helicase_C) (317-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	51.584	98.441	0.508
comFA	Latilactobacillus sakei subsp. sakei 23K	41.439	89.755	0.372