Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ViNHUV68_RS12670 Genome accession   NZ_CP134975
Coordinates   2779290..2779835 (-) Length   181 a.a.
NCBI ID   WP_038175286.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2774290..2784835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS12650 (ViNHUV68_25530) - 2774701..2775027 (-) 327 WP_391088410.1 MSHA biogenesis protein MshK -
  ViNHUV68_RS12655 (ViNHUV68_25540) pilO 2775020..2775670 (-) 651 WP_391088412.1 type 4a pilus biogenesis protein PilO -
  ViNHUV68_RS12660 (ViNHUV68_25550) - 2775670..2777109 (-) 1440 WP_391088414.1 MSHA biogenesis protein MshI -
  ViNHUV68_RS12665 (ViNHUV68_25560) csrD 2777115..2779127 (-) 2013 WP_038175287.1 RNase E specificity factor CsrD -
  ViNHUV68_RS12670 (ViNHUV68_25570) ssb 2779290..2779835 (-) 546 WP_038175286.1 single-stranded DNA-binding protein Machinery gene
  ViNHUV68_RS12675 (ViNHUV68_25580) qstR 2780118..2780765 (+) 648 WP_038175284.1 response regulator transcription factor Regulator
  ViNHUV68_RS12680 (ViNHUV68_25590) galU 2780877..2781752 (+) 876 WP_391088417.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ViNHUV68_RS12685 (ViNHUV68_25600) uvrA 2781884..2784706 (+) 2823 WP_391088418.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19800.96 Da        Isoelectric Point: 5.2358

>NTDB_id=884394 ViNHUV68_RS12670 WP_038175286.1 2779290..2779835(-) (ssb) [Vibrio sp. NH-UV-68]
MASRGVNKVILVGNLGTDPEVRFMPSGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQGYTGVLQMLGGRAQGGAPAQGGMGQSQPQQAQQGGWGQPQQPAMQKQPAQQPQSQ
PQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=884394 ViNHUV68_RS12670 WP_038175286.1 2779290..2779835(-) (ssb) [Vibrio sp. NH-UV-68]
ATGGCTAGCCGTGGAGTGAACAAAGTTATTTTAGTCGGTAATCTGGGCACTGACCCAGAGGTACGTTTCATGCCGAGTGG
CGGTGCAGTTGCCAACATTACTATTGCAACGTCTGAATCATGGCGTGATAAAGCGACGGGCGAACAGCGTGAAAAAACAG
AGTGGCACCGTGTCGCTTTGTTTGGCAAGTTGGCCGAAGTGGCGGGCGAATATCTACGTAAAGGCTCTCAAGTCTATGTA
GAAGGTCAATTGCAGACGCGTAAGTGGCAAGACCAAAGCGGCCAAGACCGTTATACAACGGAAGTTGTGGTCCAAGGTTA
CACGGGTGTTCTGCAAATGTTGGGTGGCCGTGCGCAAGGTGGTGCACCAGCTCAAGGTGGTATGGGTCAATCTCAACCTC
AACAAGCTCAGCAAGGTGGTTGGGGACAACCTCAACAGCCGGCGATGCAAAAGCAGCCAGCGCAGCAACCGCAATCTCAG
CCACAGCAGGCGCAGCCTCAATATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

83.607

100

0.845
  ssb Glaesserella parasuis strain SC1401

55.897

100

0.602
  ssb Neisseria meningitidis MC58

46.774

100

0.481
  ssb Neisseria gonorrhoeae MS11

45.856

100

0.459