Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ViNHUV68_RS12675 Genome accession   NZ_CP134975
Coordinates   2780118..2780765 (+) Length   215 a.a.
NCBI ID   WP_038175284.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2775118..2785765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS12660 (ViNHUV68_25550) - 2775670..2777109 (-) 1440 WP_391088414.1 MSHA biogenesis protein MshI -
  ViNHUV68_RS12665 (ViNHUV68_25560) csrD 2777115..2779127 (-) 2013 WP_038175287.1 RNase E specificity factor CsrD -
  ViNHUV68_RS12670 (ViNHUV68_25570) ssb 2779290..2779835 (-) 546 WP_038175286.1 single-stranded DNA-binding protein Machinery gene
  ViNHUV68_RS12675 (ViNHUV68_25580) qstR 2780118..2780765 (+) 648 WP_038175284.1 response regulator transcription factor Regulator
  ViNHUV68_RS12680 (ViNHUV68_25590) galU 2780877..2781752 (+) 876 WP_391088417.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ViNHUV68_RS12685 (ViNHUV68_25600) uvrA 2781884..2784706 (+) 2823 WP_391088418.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24763.87 Da        Isoelectric Point: 9.6409

>NTDB_id=884395 ViNHUV68_RS12675 WP_038175284.1 2780118..2780765(+) (qstR) [Vibrio sp. NH-UV-68]
MARSIYTRTISFLCEDSSLEHPFIDQLEQKLGMVIPRIIPNELLLALQQHKHRILLVDYHNYTKLKSQIRALPLADKSFE
TIVFNVSQRLTTDELLAFGHLKGVFYKDINIDLIMRGCEAVINGENWLPRKVTAQLLFHYRSVVDTQTTPATVDLTAREI
QILRCLMNGSSNIQIAEDMFISEFTVKSHLQKIFKKLGAKNRVQAAAWAKQHMRN

Nucleotide


Download         Length: 648 bp        

>NTDB_id=884395 ViNHUV68_RS12675 WP_038175284.1 2780118..2780765(+) (qstR) [Vibrio sp. NH-UV-68]
ATGGCTAGAAGCATATATACCAGAACCATCTCCTTCCTATGTGAAGACTCATCGCTTGAACATCCGTTTATCGATCAACT
AGAACAAAAGTTGGGGATGGTAATACCACGAATAATACCAAACGAACTGCTACTCGCCTTACAACAACACAAACATCGCA
TTTTGCTGGTTGACTACCATAACTACACTAAGCTTAAAAGCCAGATACGCGCCCTACCCTTAGCCGACAAATCGTTTGAA
ACCATTGTGTTTAACGTGAGCCAGCGATTGACCACCGACGAGCTTTTAGCGTTTGGCCATTTGAAAGGGGTGTTTTATAA
AGACATCAATATTGATTTGATCATGCGCGGTTGTGAAGCCGTGATCAACGGAGAAAACTGGCTGCCAAGAAAAGTGACCG
CTCAATTGCTGTTTCACTATCGCAGTGTCGTCGATACGCAAACCACTCCAGCCACAGTCGATCTGACCGCACGTGAAATT
CAAATTTTGCGTTGCCTAATGAATGGCTCTTCAAATATACAGATCGCCGAAGACATGTTTATTAGCGAGTTTACCGTGAA
ATCACACTTGCAAAAGATCTTCAAAAAACTCGGGGCGAAAAACCGCGTTCAAGCGGCCGCTTGGGCCAAACAACATATGA
GAAACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

52.113

99.07

0.516
  qstR Vibrio parahaemolyticus RIMD 2210633

51.402

99.535

0.512
  qstR Vibrio cholerae strain A1552

50.704

99.07

0.502