Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ViNHUV68_RS00100 Genome accession   NZ_CP134975
Coordinates   22328..23851 (+) Length   507 a.a.
NCBI ID   WP_391088730.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17328..28851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS00085 (ViNHUV68_00170) ilvE 18953..19900 (-) 948 WP_391088724.1 branched-chain-amino-acid transaminase -
  ViNHUV68_RS00090 (ViNHUV68_00180) ilvM 19912..20196 (-) 285 WP_391088726.1 acetolactate synthase 2 small subunit -
  ViNHUV68_RS00095 (ViNHUV68_00190) ilvG 20198..21844 (-) 1647 WP_391088728.1 acetolactate synthase 2 catalytic subunit -
  ViNHUV68_RS00100 (ViNHUV68_00200) comM 22328..23851 (+) 1524 WP_391088730.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ViNHUV68_RS00105 (ViNHUV68_00210) - 23893..24870 (-) 978 WP_391088732.1 DUF2860 family protein -
  ViNHUV68_RS00110 (ViNHUV68_00220) - 25123..25725 (-) 603 WP_391088734.1 DsbA family protein -
  ViNHUV68_RS00115 (ViNHUV68_00230) - 25751..26737 (-) 987 WP_038175835.1 serine/threonine protein kinase -
  ViNHUV68_RS00120 (ViNHUV68_00240) ccoG 26792..28210 (-) 1419 WP_391088736.1 cytochrome c oxidase accessory protein CcoG -
  ViNHUV68_RS00125 (ViNHUV68_00250) - 28472..28738 (-) 267 WP_038175837.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55449.67 Da        Isoelectric Point: 8.3757

>NTDB_id=884367 ViNHUV68_RS00100 WP_391088730.1 22328..23851(+) (comM) [Vibrio sp. NH-UV-68]
MGLAVIHSRACVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPLTKLTQQEFIGELALSGEIRRVKGVLPAALAANQVERRLIVPMENSGQAALVGKDWHKSAHSL
LEVCADLCGQQTLSLHASSDKRQVVSLQRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
AEALETASVASLTQQEINVHNWKTRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRVNPQTILRYLGRLSGPLLDRFDMSLEIPALPKGTLAQGGER
GESTDVVRQRVQVAREKMLSRASKVNALLGSREIERYCPLHKQDAEFLESALHRLGLSVRAYHRIIKVARTIADLEHSPD
IEKHHLAEALGYRAMDRLLRQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=884367 ViNHUV68_RS00100 WP_391088730.1 22328..23851(+) (comM) [Vibrio sp. NH-UV-68]
ATGGGATTAGCGGTGATTCACAGTCGGGCATGCGTTGGTGTTGAAGCGCCCGAGGTCACTGTGGAGGTTCACATCAGCAA
TGGTATGCCGGGCTTTACTTTGGTTGGCTTACCTGAAACGACGGTCAAGGAGTCGCGTGACCGGGTGCGGAGCGCGATCA
TTAACTCGCGTTTTGAGTTCCCAGCTAAACGCATCACCGTCAACCTCGCTCCTGCTGATTTGCCCAAAGAGGGAGGCCGG
TTTGATTTACCGATCGCACTGGGCATTCTTGCCGCATCAGAGCAGATCCCGCTGACCAAGTTAACTCAGCAAGAGTTCAT
TGGTGAACTGGCGTTGTCTGGTGAAATTCGTCGCGTGAAAGGGGTATTACCGGCGGCACTGGCTGCGAATCAGGTCGAGC
GACGTTTAATTGTACCGATGGAAAACAGCGGTCAGGCGGCCTTAGTGGGTAAAGATTGGCACAAATCGGCGCACAGTTTA
TTGGAAGTATGTGCTGACCTGTGTGGGCAACAGACACTGAGTTTGCACGCGAGCAGTGATAAACGCCAAGTGGTGAGTTT
GCAGCGCGACTTGCAAGATATCATTGGCCAACAGCAGGGCAAGCGAGCACTCGAGATTGCCGCGGCGGGTAATCACAATT
TGCTGTTCTTAGGACCGCCCGGCACTGGCAAGACCATGCTCGCGTCGAGGTTGTGTGATTTGCTGCCTGAGATGAGTGAT
GCAGAGGCGTTAGAAACCGCATCGGTCGCTTCTTTAACTCAGCAAGAGATCAATGTTCACAATTGGAAAACGCGCCCTTT
TCGTTCCCCACATCACTCAAGCTCGATGGCGGCGTTAGTCGGTGGTGGATCAATTCCGCGTCCGGGCGAAATTTCTCTCG
CTCATAACGGCCTACTGTTCTTAGATGAAATGCCAGAATTTGAACGTAAAGTGCTCGACTCGTTACGAGAACCGCTGGAA
TCGGGAGAGATCATTATTTCACGCGCACAGGGTAAGACTCGTTTTCCAGCACGTTTTCAATTAGTCGGGGCGCTTAACCC
GAGTCCGACAGGCTACTATGAAGGCAATCAATCACGGGTCAACCCACAAACCATCTTGCGTTATCTTGGCCGCTTATCTG
GCCCTTTGCTTGATAGGTTTGATATGTCACTCGAAATTCCCGCTCTACCGAAAGGCACTTTAGCGCAAGGTGGAGAAAGA
GGCGAGTCAACGGATGTGGTGCGCCAGCGGGTACAAGTTGCGCGTGAGAAAATGCTCAGCCGAGCGAGTAAGGTCAACGC
GTTACTTGGCAGTCGAGAAATTGAACGTTATTGCCCACTGCATAAGCAAGATGCCGAATTTCTTGAAAGTGCTTTGCATC
GTTTAGGGTTATCCGTGCGCGCTTATCACCGAATTATTAAGGTCGCGCGCACGATTGCAGATTTAGAACACAGCCCTGAT
ATCGAAAAACACCATTTAGCTGAAGCTTTGGGCTATCGCGCGATGGATCGTTTGCTCCGACAACTGACTGCGCAGGCGGT
CTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

86.193

100

0.862
  comM Vibrio campbellii strain DS40M4

83.432

100

0.834
  comM Haemophilus influenzae Rd KW20

64.892

100

0.649
  comM Glaesserella parasuis strain SC1401

62.891

100

0.635
  comM Legionella pneumophila str. Paris

50.402

98.225

0.495
  comM Legionella pneumophila strain ERS1305867

50.402

98.225

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.874

99.803

0.438