Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RKE25_RS03010 Genome accession   NZ_CP134867
Coordinates   693109..694629 (+) Length   506 a.a.
NCBI ID   WP_311840790.1    Uniprot ID   A0AA96EG81
Organism   Dyella sp. BiH032     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 688109..699629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE25_RS02975 (RKE25_02975) - 688285..688995 (+) 711 WP_311840784.1 YdcF family protein -
  RKE25_RS02980 (RKE25_02980) hemF 689076..689978 (+) 903 WP_311840785.1 oxygen-dependent coproporphyrinogen oxidase -
  RKE25_RS02985 (RKE25_02985) - 690018..690680 (-) 663 WP_311840786.1 hypothetical protein -
  RKE25_RS02990 (RKE25_02990) gpmA 690821..691564 (+) 744 WP_311840787.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  RKE25_RS02995 (RKE25_02995) - 691679..692212 (+) 534 WP_311840788.1 DUF1453 domain-containing protein -
  RKE25_RS03000 (RKE25_03000) glnK 692213..692551 (-) 339 WP_311840789.1 P-II family nitrogen regulator -
  RKE25_RS03005 (RKE25_03005) - 692743..693000 (+) 258 WP_167253335.1 accessory factor UbiK family protein -
  RKE25_RS03010 (RKE25_03010) comM 693109..694629 (+) 1521 WP_311840790.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RKE25_RS03015 (RKE25_03015) - 694909..696714 (+) 1806 WP_311840791.1 sodium:proton antiporter -
  RKE25_RS03020 (RKE25_03020) aceA 696797..698113 (-) 1317 WP_311840792.1 isocitrate lyase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54372.05 Da        Isoelectric Point: 8.0280

>NTDB_id=884198 RKE25_RS03010 WP_311840790.1 693109..694629(+) (comM) [Dyella sp. BiH032]
MSLAVTLSRAQEGVAAPQVMVEVHLSGGLPSTNIVGLPEAAVREARDRVRVAIQSTAFEYPNRRVTVNLAPAELPKDGGR
FDLAIALGILAAGGQVPREGLSDCEFLGELALSGTLRGVSGVLPALMRARAHGRKVVVPRANAAEAALIPDADVRVADTL
ADVCGWLRGIQELPAPGAAPPVSEGETNERGPDLMDVRGQRQARRALEIAAAGGHHLLLIGPPGTGKTMLAERLPGILPP
MNESEALETCAVLSVAGQSIDPAQWRRRPFRAPHHTASAVALVGGGSQPRPGEISLAHHGVLFLDELPEYSRHVLDVLRE
PLESGSIVISRAARQSTFPAQFQLVAAMNPCPCGYAGDARERCRCTPDQVRRYRSRISGPLMDRIDLCVDVPRQPLSEVS
ATRGEHDEDSVTVRARVVRARQQALLRAGRCNAEINTRELERDCALGVAERAWFEGALERLGLSARAYHRTLRVARTIAD
LDGGAASLRRAHLAEALQYRRSLENQ

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=884198 RKE25_RS03010 WP_311840790.1 693109..694629(+) (comM) [Dyella sp. BiH032]
ATGAGTCTTGCCGTCACCCTCAGCCGAGCCCAGGAGGGTGTGGCCGCTCCGCAAGTGATGGTGGAAGTACACCTCTCCGG
CGGCCTGCCCAGTACCAACATCGTCGGCCTGCCCGAAGCCGCCGTGCGGGAGGCCCGCGACCGGGTGCGCGTGGCGATTC
AGAGCACTGCCTTCGAGTATCCCAATCGCAGGGTCACGGTGAACCTGGCACCCGCCGAATTGCCCAAGGATGGCGGTCGC
TTCGACCTGGCCATCGCCCTGGGCATCCTCGCGGCGGGCGGGCAGGTGCCCCGCGAAGGGTTGAGCGACTGCGAGTTCCT
GGGCGAACTGGCGTTGTCCGGCACGTTGCGCGGGGTTTCGGGTGTCCTGCCCGCGTTGATGCGAGCCAGGGCGCACGGCC
GGAAAGTCGTGGTGCCTCGCGCCAACGCGGCCGAGGCCGCGCTCATACCCGATGCCGACGTGCGCGTGGCCGATACGCTG
GCGGACGTGTGCGGTTGGCTGCGCGGCATCCAGGAGCTTCCCGCGCCCGGCGCCGCGCCGCCCGTTTCGGAGGGCGAAAC
GAACGAGCGGGGGCCGGACCTGATGGACGTACGCGGGCAGCGCCAAGCCCGCCGGGCTCTGGAGATAGCCGCCGCCGGCG
GCCATCATCTGCTGCTGATCGGCCCGCCCGGTACGGGCAAGACCATGCTGGCGGAGCGGCTGCCCGGGATCCTGCCGCCG
ATGAACGAATCGGAAGCGCTGGAGACCTGCGCCGTGCTGTCGGTCGCCGGTCAGTCGATCGATCCTGCCCAATGGCGGAG
GCGGCCCTTCCGGGCTCCCCATCACACGGCTTCCGCCGTCGCGCTGGTGGGCGGCGGCTCGCAGCCGCGACCGGGCGAGA
TTTCGCTGGCGCATCACGGCGTGCTGTTCCTGGACGAACTGCCGGAGTACAGCCGGCATGTCCTCGATGTGCTGCGCGAG
CCGCTCGAATCCGGTTCGATCGTCATTTCGCGTGCGGCGCGGCAGTCCACGTTCCCGGCACAGTTCCAGCTGGTAGCCGC
GATGAACCCATGTCCCTGTGGTTATGCCGGCGATGCGCGGGAGCGCTGCCGCTGCACGCCGGACCAGGTGCGCCGATACC
GCTCCCGCATTTCCGGCCCCCTGATGGACCGCATCGACCTATGCGTCGATGTGCCGCGCCAGCCCTTGAGCGAAGTGAGC
GCCACGCGCGGCGAGCACGACGAAGACTCGGTTACCGTCCGTGCCCGGGTTGTAAGAGCCCGGCAACAGGCTCTGCTCCG
TGCCGGGCGATGCAACGCCGAAATCAATACGCGCGAGCTGGAACGCGACTGCGCCCTGGGTGTCGCCGAGCGCGCCTGGT
TCGAGGGTGCCCTGGAGCGCCTGGGGCTGTCGGCGCGGGCGTATCACCGGACCTTGCGCGTCGCGCGCACCATCGCCGAC
CTGGATGGCGGGGCAGCTTCGCTGCGGCGGGCGCATCTTGCCGAAGCGCTCCAGTATCGACGTTCTTTGGAAAATCAATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.4

98.814

0.538
  comM Haemophilus influenzae Rd KW20

53.571

99.605

0.534
  comM Vibrio campbellii strain DS40M4

52.8

98.814

0.522
  comM Glaesserella parasuis strain SC1401

51.984

99.605

0.518
  comM Legionella pneumophila str. Paris

49.507

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.507

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.173

98.419

0.425