Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RI132_RS04705 Genome accession   NZ_CP134783
Coordinates   994657..994959 (+) Length   100 a.a.
NCBI ID   WP_011078144.1    Uniprot ID   -
Organism   Vibrio vulnificus strain GCU-01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 989657..999959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS04690 (RI132_04690) lon 989671..992022 (+) 2352 WP_011078147.1 endopeptidase La -
  RI132_RS04695 (RI132_04695) - 992216..992488 (+) 273 WP_013572181.1 HU family DNA-binding protein -
  RI132_RS04700 (RI132_04700) ppiD 992665..994524 (+) 1860 WP_130191193.1 peptidylprolyl isomerase -
  RI132_RS04705 (RI132_04705) comEA 994657..994959 (+) 303 WP_011078144.1 helix-hairpin-helix domain-containing protein Machinery gene
  RI132_RS04710 (RI132_04710) rrtA 995006..995566 (-) 561 WP_277986045.1 rhombosortase -
  RI132_RS04715 (RI132_04715) - 995570..996178 (+) 609 WP_130191191.1 tRNA-uridine aminocarboxypropyltransferase -
  RI132_RS04720 (RI132_04720) - 996200..997531 (-) 1332 WP_165386383.1 anti-phage deoxyguanosine triphosphatase -
  RI132_RS04725 (RI132_04725) yfbR 997537..998085 (-) 549 WP_231846899.1 5'-deoxynucleotidase -
  RI132_RS04730 (RI132_04730) - 998202..999416 (-) 1215 WP_311888724.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10866.71 Da        Isoelectric Point: 9.6573

>NTDB_id=883720 RI132_RS04705 WP_011078144.1 994657..994959(+) (comEA) [Vibrio vulnificus strain GCU-01]
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=883720 RI132_RS04705 WP_011078144.1 994657..994959(+) (comEA) [Vibrio vulnificus strain GCU-01]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCAGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGCATTAAAAAAGCTCAGCAAATTGTTGATTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

59

100

0.59
  comEA Vibrio campbellii strain DS40M4

54

100

0.54
  comEA Vibrio cholerae C6706

52.041

98

0.51
  comEA Vibrio cholerae strain A1552

52.041

98

0.51
  comEA/comE1 Glaesserella parasuis strain SC1401

60

60

0.36