Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RI132_RS00120 Genome accession   NZ_CP134783
Coordinates   22821..24344 (+) Length   507 a.a.
NCBI ID   WP_130191469.1    Uniprot ID   -
Organism   Vibrio vulnificus strain GCU-01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 17821..29344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS00105 (RI132_00105) ilvE 19459..20397 (-) 939 WP_103193923.1 branched-chain-amino-acid transaminase -
  RI132_RS00110 (RI132_00110) ilvM 20409..20693 (-) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  RI132_RS00115 (RI132_00115) ilvG 20705..22351 (-) 1647 WP_039555037.1 acetolactate synthase 2 catalytic subunit -
  RI132_RS00120 (RI132_00120) comM 22821..24344 (+) 1524 WP_130191469.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RI132_RS00125 (RI132_00125) - 24383..25357 (-) 975 WP_045623571.1 DUF2860 domain-containing protein -
  RI132_RS00130 (RI132_00130) - 25500..26381 (+) 882 WP_011151432.1 acyltransferase -
  RI132_RS00135 (RI132_00135) - 26422..27027 (-) 606 WP_011079070.1 thiol:disulfide interchange protein DsbA/DsbL -
  RI132_RS00140 (RI132_00140) - 27060..28046 (-) 987 WP_047112465.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54836.00 Da        Isoelectric Point: 8.7918

>NTDB_id=883711 RI132_RS00120 WP_130191469.1 22821..24344(+) (comM) [Vibrio vulnificus strain GCU-01]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFIGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAYLCGQQALSLHQTKQALQPSSHSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGER
GEPTAVVKARVEQARERMQHRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGVPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=883711 RI132_RS00120 WP_130191469.1 22821..24344(+) (comM) [Vibrio vulnificus strain GCU-01]
ATGGGGTTGGCGATTATTCATAGCCGCGCCAGTGTGGGCGTAGAAGCGCCTTCAGTGAGCGTGGAAGTGCACATCAGTAA
CGGTTTACCGGGATTTACCTTAGTGGGGTTGCCGGAAACCACCGTGAAGGAGTCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGTAACTTCCAATTTCCTGCCAAGCGGATCACCGTCAACTTGGCACCTGCCGATCTGCCCAAAGAAGGGGGACGT
TTTGACTTGCCGATCGCACTTGGCATTTTGGCCGCTTCCGAGCAGATCTCAGTTCAGTTTCTCCAGCAACATGAATTTAT
CGGTGAGTTAGCCTTAAGTGGTGAGCTGCGAGCGGTGAAAGGGGTACTGCCAGCCGCACTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTGCCTCATGCTAATGGGGATCAAGCCGCCTTGGTTGGCAAAAACATGCATAAATCAGCGTGCTCGTTG
ATTGAAGTTTGTGCTTACTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
CAGTCGAGATTTACAAGACATCATTGGTCAGCAACAAGGAAAGCGCGCGTTGGAGATTGCCGCTGCGGGCAATCACAATT
TATTGTTTTTGGGGCCTCCAGGGACGGGTAAAACCATGCTGGCGTCACGTTTGCGAGATCTGCTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGTGCGCCGCATCACTCGAGTTCTATGGCGGCGTTGGTGGGCGGTGGAACCATTCCACGTCCTGGAGAAATCTCACTCG
CACACAACGGCTTACTGTTTTTGGATGAGATGCCGGAATTTGAGCGTAAAGTGCTCGATTCAATGCGCGAGCCGCTAGAG
TCGGGGGAAATCATCATTTCACGAGCGCAGGGTAAAACCCGTTTTCCTGCTCGCTTTCAGTTGGTCGGAGCGCTGAATCC
GAGCCCCACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GTCCACTTTTGGATCGTTTTGATATGTCACTCGAGATCCCCGCATTACCCAAAGGCACATTGGCGGAAGGGGGGGAGCGA
GGTGAACCAACGGCGGTGGTGAAGGCGCGAGTGGAGCAGGCGAGAGAGCGAATGCAGCATCGCAATGGTAAGGTGAATGC
CCTATTAGGCAGCCGAGAAATCGAAGCGTTTTGTCCACTAAGTAAGCAGGATGCCGAGTTTCTTGAAACAGCGTTGCATC
GTTTGGGGTTATCGATTCGTGCGTATCACCGCATCATCAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGTACCTCAG
ATCACGCGTGCGCATTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGCTCACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

87.574

100

0.876
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Haemophilus influenzae Rd KW20

64.694

100

0.647
  comM Glaesserella parasuis strain SC1401

62.648

99.803

0.625
  comM Legionella pneumophila str. Paris

50.605

97.83

0.495
  comM Legionella pneumophila strain ERS1305867

50.605

97.83

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432