Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MPHASIOC01_RS26475 Genome accession   NZ_CP134782
Coordinates   5524058..5525578 (+) Length   506 a.a.
NCBI ID   WP_064596835.1    Uniprot ID   A0A1B7L4U6
Organism   Mangrovibacter phragmitis strain ASIOC01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5519058..5530578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPHASIOC01_RS26455 (MPHASIOC01_005271) ilvE 5520631..5521560 (-) 930 WP_064596841.1 branched-chain-amino-acid transaminase -
  MPHASIOC01_RS26460 (MPHASIOC01_005272) ilvM 5521578..5521835 (-) 258 WP_064596839.1 acetolactate synthase 2 small subunit -
  MPHASIOC01_RS26465 (MPHASIOC01_005273) ilvG 5521832..5523481 (-) 1650 WP_353613615.1 acetolactate synthase 2 catalytic subunit -
  MPHASIOC01_RS26470 (MPHASIOC01_005274) ilvL 5523621..5523719 (-) 99 WP_074388785.1 ilv operon leader peptide -
  MPHASIOC01_RS26475 (MPHASIOC01_005275) comM 5524058..5525578 (+) 1521 WP_064596835.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MPHASIOC01_RS26480 (MPHASIOC01_005276) - 5525700..5526038 (-) 339 WP_064596833.1 DUF413 domain-containing protein -
  MPHASIOC01_RS26485 (MPHASIOC01_005277) hdfR 5526158..5526985 (+) 828 WP_064596831.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55452.77 Da        Isoelectric Point: 7.8354

>NTDB_id=883704 MPHASIOC01_RS26475 WP_064596835.1 5524058..5525578(+) (comM) [Mangrovibacter phragmitis strain ASIOC01]
MSLSIVFTRAALGITAPLITVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYTFPARKVTINLAPADLPKEGGR
YDLPIAVALLAASGQLSASRLPEFEFVGELALTGNLRGVPGAISCAREAQQCGRQLIVARDNAEEVGLIDPESSLIADHL
QQVCAFLEKQQTLDSPPILTEIPPEITCDLADIIGQQQGKRALEITAAGGHNLLLLGPPGTGKTMLASRLNGLLPPLSDS
EALESAAITSLVSPLMLQRKWRQRPFRAPHHSASLTSMVGGGSIPLPGEVSLAHNGVLFLDELPEFERRVLDALREPIES
GEIHISRTRAKLTYPARFQLIAAMNPSPTGHYEGRHNRSTPDQVLKYLSRLSGPFIDRFDLTLEIPLLPPGSLSKPERGT
ETTDQVRERVLHARQRQHSRQQKINAHLSNQEIRQYCPLQPQDAVWLEETLHKLGLSIRAWQRLIKVARTIADLEQATDI
GRTHLLEALSYRAMDRLLLRLQRQVG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=883704 MPHASIOC01_RS26475 WP_064596835.1 5524058..5525578(+) (comM) [Mangrovibacter phragmitis strain ASIOC01]
ATGTCACTATCCATTGTCTTCACTCGTGCAGCTCTGGGTATCACCGCGCCGTTGATAACAGTGGAAGTACATATCAGCGC
CGGGTTACCAGGATTAACTATCGTCGGGCTACCAGAAACAACGGTTAAAGAAGCCCGCGACCGGGTTCGTTCAGCATTAA
TCAATAGCGGATATACGTTTCCTGCCCGCAAGGTGACAATTAATTTAGCTCCAGCGGATTTACCCAAAGAAGGTGGGCGA
TATGACCTGCCTATTGCTGTTGCTTTGCTGGCCGCATCAGGCCAACTTTCAGCCAGTCGTCTGCCAGAATTCGAATTTGT
TGGTGAACTGGCTCTTACCGGGAACCTGAGAGGTGTACCTGGTGCAATTTCCTGCGCACGAGAAGCACAGCAGTGTGGCA
GGCAACTCATTGTGGCCCGAGATAATGCAGAAGAAGTCGGATTGATTGATCCTGAAAGTAGCCTGATCGCCGATCATTTG
CAGCAGGTTTGCGCATTTCTGGAAAAACAACAAACGCTGGACTCACCCCCCATTCTCACCGAAATCCCTCCTGAGATTAC
ATGCGATTTGGCCGATATTATTGGTCAGCAGCAAGGCAAAAGAGCACTTGAGATAACGGCTGCTGGCGGACACAATTTAT
TATTACTTGGCCCTCCCGGCACCGGAAAAACTATGCTGGCATCACGGCTTAATGGCCTGTTACCGCCATTAAGCGATTCA
GAGGCACTTGAAAGTGCTGCAATTACCAGCCTGGTTTCTCCTCTCATGCTACAAAGGAAATGGCGTCAAAGGCCATTCAG
GGCGCCTCATCACAGCGCATCTCTCACATCAATGGTGGGAGGAGGCAGTATTCCCCTGCCCGGAGAGGTCTCCCTTGCGC
ACAATGGTGTCTTGTTTCTGGATGAATTGCCCGAGTTTGAAAGGCGGGTACTGGATGCGCTACGGGAACCTATTGAATCA
GGGGAAATTCACATATCGCGCACACGAGCAAAATTAACCTACCCGGCACGTTTTCAACTTATTGCCGCTATGAACCCAAG
CCCGACAGGCCACTATGAAGGCAGGCATAACCGCAGCACTCCGGATCAGGTACTTAAATATCTCAGCCGGTTATCTGGCC
CATTTATCGACCGCTTTGATTTAACGCTGGAGATCCCGCTGCTTCCCCCCGGTTCATTGAGTAAACCAGAAAGAGGCACA
GAAACAACAGACCAGGTGCGAGAAAGGGTCCTGCATGCCAGACAACGCCAGCATTCACGCCAGCAAAAAATTAATGCGCA
TTTATCTAATCAGGAGATCCGCCAATATTGTCCGTTACAACCTCAGGATGCTGTCTGGCTTGAGGAGACACTGCATAAAC
TGGGGTTATCCATTCGTGCATGGCAACGACTGATTAAAGTTGCGAGAACAATTGCTGATCTTGAGCAGGCTACGGATATT
GGCCGCACGCACCTGTTGGAGGCATTGAGTTATCGGGCAATGGACAGACTGCTGTTACGTTTGCAAAGACAGGTAGGCTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B7L4U6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.904

100

0.613
  comM Glaesserella parasuis strain SC1401

60.47

100

0.611
  comM Vibrio cholerae strain A1552

59.961

100

0.601
  comM Vibrio campbellii strain DS40M4

57.957

100

0.583
  comM Legionella pneumophila str. Paris

47.984

98.024

0.47
  comM Legionella pneumophila strain ERS1305867

47.984

98.024

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.339

100

0.415