Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RND59_RS08145 Genome accession   NZ_CP134780
Coordinates   1785515..1786048 (-) Length   177 a.a.
NCBI ID   WP_077337393.1    Uniprot ID   A0A1R4LTH3
Organism   Vibrio ruber strain HNIBRBA4764     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1780515..1791048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND59_RS08140 (RND59_08140) metH 1781724..1785398 (+) 3675 WP_311844165.1 methionine synthase -
  RND59_RS08145 (RND59_08145) ssb 1785515..1786048 (-) 534 WP_077337393.1 single-stranded DNA-binding protein Machinery gene
  RND59_RS08150 (RND59_08150) qstR 1786321..1786968 (+) 648 WP_077337392.1 response regulator transcription factor Regulator
  RND59_RS08155 (RND59_08155) galU 1787085..1787993 (+) 909 WP_311844166.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RND59_RS08160 (RND59_08160) uvrA 1788132..1790954 (+) 2823 WP_077337390.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19483.44 Da        Isoelectric Point: 5.2252

>NTDB_id=883669 RND59_RS08145 WP_077337393.1 1785515..1786048(-) (ssb) [Vibrio ruber strain HNIBRBA4764]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKTTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQERYTTEVVVQGFNGVMQMLGGRQGAGSGGQAQSGMQSQQQNSGWGQPQQPQSQAAHQQPQQQSAP
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=883669 RND59_RS08145 WP_077337393.1 1785515..1786048(-) (ssb) [Vibrio ruber strain HNIBRBA4764]
ATGGCAAGCCGTGGAGTAAACAAAGTTATATTAGTTGGGAACCTGGGAAGTGATCCTGAAGTCCGTTACATGCCAAGTGG
CGGTGCAGTTGCGAACATCACGATTGCGACATCAGAAACATGGCGCGATAAAACGACGGGTGAGCAAAGAGAAAAAACCG
AATGGCATCGTGTTGCCCTGTTCGGAAAATTGGCAGAAGTCGCCGGAGAATATCTGCGTAAAGGTTCTCAGGTATATATT
GAAGGGCAACTGCAAACACGGAAATGGCAAGATCAAAGCGGTCAGGAGCGTTATACAACTGAAGTGGTTGTTCAAGGGTT
TAACGGTGTGATGCAAATGCTGGGTGGACGTCAGGGAGCAGGGTCTGGTGGCCAAGCTCAGTCCGGGATGCAGTCTCAAC
AACAAAATAGTGGTTGGGGACAACCGCAACAGCCCCAGTCCCAAGCGGCTCATCAGCAACCACAGCAACAATCTGCACCG
CAACCACAATACAATGAGCCACCAATGGATTTTGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4LTH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.663

100

0.825
  ssb Glaesserella parasuis strain SC1401

52.85

100

0.576
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.469
  ssb Neisseria meningitidis MC58

45.604

100

0.469