Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   RND59_RS08150 Genome accession   NZ_CP134780
Coordinates   1786321..1786968 (+) Length   215 a.a.
NCBI ID   WP_077337392.1    Uniprot ID   -
Organism   Vibrio ruber strain HNIBRBA4764     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1781321..1791968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND59_RS08140 (RND59_08140) metH 1781724..1785398 (+) 3675 WP_311844165.1 methionine synthase -
  RND59_RS08145 (RND59_08145) ssb 1785515..1786048 (-) 534 WP_077337393.1 single-stranded DNA-binding protein Machinery gene
  RND59_RS08150 (RND59_08150) qstR 1786321..1786968 (+) 648 WP_077337392.1 response regulator transcription factor Regulator
  RND59_RS08155 (RND59_08155) galU 1787085..1787993 (+) 909 WP_311844166.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  RND59_RS08160 (RND59_08160) uvrA 1788132..1790954 (+) 2823 WP_077337390.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25305.49 Da        Isoelectric Point: 9.9392

>NTDB_id=883670 RND59_RS08150 WP_077337392.1 1786321..1786968(+) (qstR) [Vibrio ruber strain HNIBRBA4764]
MKRSNYSRMLYILYPDNQEPPTLYRQIEVALGQILPKIQPRQFMLSHQTDRHKILLFDYQHKEVLLSRLNMYNALDLCLE
TVVINVDKRPRTEELLQLGNLKGLFYRSDPIELIIAALHEIREGRIYLPRHICGQLLHYYRHLFNNKHISAAISLTSREL
EILRCLKTGATNTQIADNLFISEFTVKSHLYQIFKKISVKNRTQATTWAKQNLVS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=883670 RND59_RS08150 WP_077337392.1 1786321..1786968(+) (qstR) [Vibrio ruber strain HNIBRBA4764]
ATGAAAAGATCAAATTACAGCAGAATGCTTTATATCCTTTATCCCGATAATCAAGAACCTCCAACGCTCTATCGTCAAAT
CGAGGTGGCGCTGGGACAGATACTCCCGAAAATTCAACCCCGGCAATTTATGCTGTCTCATCAAACCGATCGGCACAAAA
TACTCCTGTTTGATTATCAACATAAAGAGGTATTGCTATCCCGTTTGAACATGTATAACGCACTGGATTTATGCCTCGAA
ACGGTTGTCATCAATGTTGATAAACGCCCGAGAACAGAAGAACTTCTCCAGTTAGGCAATCTGAAAGGACTCTTCTATCG
CAGTGATCCGATTGAACTGATTATTGCTGCACTCCATGAGATCCGAGAGGGGCGTATTTATTTACCACGGCATATTTGTG
GTCAGCTCCTTCATTACTATCGCCATTTATTTAACAATAAACATATCAGTGCAGCGATATCTCTGACTTCCAGAGAGTTG
GAAATTCTGCGTTGTCTGAAAACAGGGGCAACAAATACACAAATCGCAGATAACCTGTTCATCAGTGAGTTCACGGTTAA
ATCCCATCTGTATCAAATTTTTAAGAAAATATCGGTAAAAAACCGAACTCAAGCGACAACATGGGCAAAACAAAATCTAG
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

48.387

100

0.488
  qstR Vibrio campbellii strain DS40M4

46.296

100

0.465
  qstR Vibrio parahaemolyticus RIMD 2210633

44.495

100

0.451