Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RND59_RS06005 Genome accession   NZ_CP134780
Coordinates   1280352..1281875 (-) Length   507 a.a.
NCBI ID   WP_077335558.1    Uniprot ID   A0A1R4LJD4
Organism   Vibrio ruber strain HNIBRBA4764     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1275352..1286875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND59_RS05985 (RND59_05985) - 1275429..1277318 (+) 1890 WP_311846361.1 methyl-accepting chemotaxis protein -
  RND59_RS05990 (RND59_05990) - 1277479..1278465 (+) 987 WP_311846362.1 serine/threonine protein kinase -
  RND59_RS05995 (RND59_05995) - 1278617..1279216 (+) 600 WP_077335560.1 thiol:disulfide interchange protein DsbA/DsbL -
  RND59_RS06000 (RND59_06000) - 1279339..1280217 (-) 879 WP_311846363.1 acyltransferase -
  RND59_RS06005 (RND59_06005) comM 1280352..1281875 (-) 1524 WP_077335558.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RND59_RS06010 (RND59_06010) ilvG 1282358..1284004 (+) 1647 WP_311846364.1 acetolactate synthase 2 catalytic subunit -
  RND59_RS06015 (RND59_06015) ilvM 1284017..1284301 (+) 285 WP_077335554.1 acetolactate synthase 2 small subunit -
  RND59_RS06020 (RND59_06020) - 1284312..1285253 (+) 942 WP_077335552.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55325.47 Da        Isoelectric Point: 7.1019

>NTDB_id=883664 RND59_RS06005 WP_077335558.1 1280352..1281875(-) (comM) [Vibrio ruber strain HNIBRBA4764]
MGLAIIHSRASVGVEAPLVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIIHSRFEFPPKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIISDHLANYEFLGELALSGQLRTVKGVLPAALAAGLAERALVVPHENGDQAALVGQGQHYSAGSL
QEVCQALCGDLSLGLYQSQPEIKQPTSSRDLQDIIGQQQGKRALEIAAAGHHNLLFLGPPGTGKTMLASRLCDLLPEMSN
EEAMETAAVASLTQQDIHQYNWKQRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERRVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGQESRINPQHILRYLSRLSGPLLDRFDLSIEIPALPKGMLAEGGGR
GETTQAVRERVLRARELMLRLRGKANSLLTSREIETFCPLVKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLAEEEH
IQRAHLAEALGYRAMDRLLKQLTIQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=883664 RND59_RS06005 WP_077335558.1 1280352..1281875(-) (comM) [Vibrio ruber strain HNIBRBA4764]
ATGGGGTTAGCAATTATTCATAGTCGGGCAAGTGTCGGGGTCGAAGCACCATTGGTGACTGTTGAAGTTCACATTAGTAA
TGGGATGCCCGGATTTACACTGGTGGGGTTACCGGAAACCACCGTCAAGGAATCACGGGATCGGGTTCGCAGTGCGATTA
TCCATTCCCGGTTTGAATTTCCCCCCAAGCGTATCACGGTCAATCTGGCACCGGCCGATTTACCCAAGGAGGGCGGGCGT
TTTGATCTGCCTATTGCTTTAGGCATTCTGGCTGCCTCGGATCAAATCATTTCGGATCATCTGGCAAATTATGAATTTTT
GGGGGAGTTAGCGTTATCCGGTCAGCTGCGAACTGTGAAAGGGGTATTACCCGCAGCTTTGGCTGCCGGGCTGGCTGAGC
GTGCTTTGGTTGTGCCGCATGAGAATGGTGATCAGGCGGCCTTAGTCGGGCAAGGTCAGCATTACTCTGCCGGGAGTTTG
CAGGAAGTCTGTCAGGCGTTGTGCGGTGATTTGTCACTGGGGTTGTATCAGTCTCAGCCCGAGATTAAGCAACCGACGTC
TTCGCGGGATTTGCAGGATATTATTGGCCAGCAACAGGGCAAGCGTGCTTTAGAAATTGCAGCGGCCGGTCATCATAATT
TACTGTTTCTCGGGCCTCCGGGGACGGGGAAAACGATGCTGGCTTCCCGATTGTGTGATTTGCTGCCCGAGATGAGTAAT
GAAGAAGCAATGGAAACGGCAGCGGTTGCATCGCTGACGCAGCAGGACATTCATCAGTACAACTGGAAACAACGACCATT
CCGTGCACCGCATCATTCCAGTTCGATGGCCGCTTTGGTCGGCGGTGGTTCGATTCCTCGTCCCGGTGAAATCTCGCTGG
CTCATAACGGATTACTTTTTCTTGATGAGATGCCGGAGTTTGAACGTCGGGTGCTCGATTCATTACGTGAACCGTTGGAA
TCGGGAGAGATTGTCATCTCCCGGGCGCAAGGTAAAACCCGTTTCCCGGCGCGCTTTCAGTTAGTCGGTGCGTTGAATCC
AAGCCCGACCGGCTATTATGAAGGTCAGGAGAGCCGGATCAATCCGCAACACATTCTCCGTTATCTGAGCCGGTTATCAG
GGCCGTTATTGGATCGGTTTGACCTGTCTATTGAAATCCCTGCTTTACCTAAAGGCATGCTTGCTGAAGGCGGTGGTCGG
GGAGAGACCACACAGGCGGTTCGTGAGCGAGTGCTTCGGGCCCGTGAGTTAATGCTGCGTTTACGGGGGAAAGCGAATTC
GCTGCTCACCAGCCGGGAAATTGAAACTTTCTGCCCGCTGGTAAAATCCGATGCCGAGTTTCTGGAAAATGCATTGCACC
GTCTGGGTCTGTCTATTCGTGCTTATCACCGCATCATTAAAGTTGCCCGCACTATTGCTGATTTGGCAGAAGAGGAACAT
ATACAGCGGGCACATCTGGCAGAAGCGTTGGGATATCGTGCGATGGATCGATTATTGAAGCAACTGACGATACAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4LJD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.037

100

0.83
  comM Vibrio campbellii strain DS40M4

81.657

100

0.817
  comM Glaesserella parasuis strain SC1401

65.02

99.803

0.649
  comM Haemophilus influenzae Rd KW20

64.51

100

0.649
  comM Legionella pneumophila str. Paris

48.992

97.83

0.479
  comM Legionella pneumophila strain ERS1305867

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.504

100

0.436