Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RMV18_RS28705 Genome accession   NZ_CP134774
Coordinates   6398090..6399583 (+) Length   497 a.a.
NCBI ID   WP_311884262.1    Uniprot ID   -
Organism   Pseudomonas sp. VD-NE ext     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6393090..6404583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMV18_RS28680 - 6393490..6394827 (-) 1338 WP_034152035.1 ammonium transporter -
  RMV18_RS28685 glnK 6394866..6395204 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  RMV18_RS28690 - 6395618..6395878 (+) 261 WP_311884258.1 accessory factor UbiK family protein -
  RMV18_RS28695 - 6396243..6396755 (+) 513 WP_311884259.1 Bro-N domain-containing protein -
  RMV18_RS28700 - 6396952..6397497 (+) 546 WP_311884260.1 N-acetyltransferase -
  RMV18_RS28705 comM 6398090..6399583 (+) 1494 WP_311884262.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RMV18_RS28710 - 6399613..6400233 (+) 621 WP_311884264.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  RMV18_RS28715 - 6400241..6400954 (+) 714 WP_311884266.1 phosphocholine cytidylyltransferase family protein -
  RMV18_RS28720 - 6400967..6402943 (-) 1977 WP_311884268.1 methyl-accepting chemotaxis protein -
  RMV18_RS28725 - 6403126..6404046 (-) 921 WP_311884270.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53080.25 Da        Isoelectric Point: 8.0043

>NTDB_id=883547 RMV18_RS28705 WP_311884262.1 6398090..6399583(+) (comM) [Pseudomonas sp. VD-NE ext]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDEVECLGELALSGAVRPVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAARPYPDLNEVQGQMAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GFIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAAALVAEARERQQKRQGCANAFLDLPGLRRHCRLSTADETWLESACERLTLSLRSAHRLLKVARTLADLSQEKD
ITREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=883547 RMV18_RS28705 WP_311884262.1 6398090..6399583(+) (comM) [Pseudomonas sp. VD-NE ext]
ATGTCTCTCTCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGAAGCCCCCGCTGTCACCGTCGAAGTCCATCTGGCCAA
CGGCCTGCCGTCGCTGACCATGGTCGGTCTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGATCGGGTGCGTAGCGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACGTTGAATCTGGCGCCGGCGGATTTGCCCAAGGATGGCGGACGG
TTTGATCTGGCGATTGCCCTGGGGATTTTGTCGGCGAGTGTGCAGGTGCCGTGTCTGACGCTGGATGAGGTGGAATGTCT
GGGTGAGTTGGCGTTGTCCGGCGCGGTGCGGCCGGTGCGTGGGGTGTTGCCCGCAGCACTGGCGGCACGCAAGGCCGGGC
GGGCGCTGGTGGTGCCGCGAGCGAATGCCGAGGAGGCCTGTCTGGCGTCCGGGTTGAAGGTGTTTGCGGTGGATCATCTG
CTGGAGGCGGTGGCGCATTTCAACGGGCATACGCCGGTGGAGCCTTACGTGTCGGACGGTTTGATCCATGCCGCCAGACC
CTATCCAGACCTGAACGAAGTGCAGGGGCAAATGGCAGCCAAACGGGCGCTGCTGATTGCCGCAGCGGGTGCGCATAACC
TGCTGTTCAGCGGTCCCCCGGGGACGGGCAAGACGCTGTTGGCCAGTCGATTGCCGGGACTGCTCCCGCCGCTGTCCGAA
TGCGAAGCCCTTGAGGTTGCGGCGATTCAATCCGTCGCCAGTGGCGTGCCGCTGACCCACTGGCCGCAGCGTCCATTCCG
CCAGCCGCACCATTCCGCATCCGGCCCGGCACTGGTCGGGGGCAGCTCAAAACCGCAACCCGGCGAGATCACCCTCGCGC
ACCACGGCGTGCTGTTCCTCGATGAACTGCCGGAATTTGATCGCAAGGTGCTGGAAGTTTTACGTGAGCCTTTGGAGTCG
GGGTTCATCGTGATCGCCCGGGCCAAGGATCGCGTGCGTTTCCCCGCGCGCTTTCAGTTGGTGGCGGCGATGAACCCTTG
CCCCTGTGGATATCTTGGTGAACCCAGCGGCAAGTGTTCGTGCACGCCGGACATGGTTCAGCGCTATCGCAACAAGTTGT
CGGGTCCCCTGTTGGACCGGATCGACTTACACCTGACGGTTGCGCGGGAGGCGACAGCGCTGAACCCTGCGGTAAAGCCA
GGAGAAGACAGCGCCAGTGCGGCCGCGTTGGTAGCCGAAGCCCGCGAACGCCAACAGAAACGCCAGGGTTGTGCCAATGC
GTTTCTTGATCTGCCAGGCCTGCGTCGCCACTGCAGGTTATCCACAGCCGATGAGACCTGGCTGGAATCAGCCTGTGAAC
GGCTGACCCTGTCACTGCGCTCGGCGCACCGGTTGCTCAAGGTCGCCAGGACGTTGGCCGATCTGAGCCAGGAAAAAGAC
ATCACGCGCGAACACCTGGCGGAGGCATTGCAATATCGGCCGGCAACACAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Vibrio campbellii strain DS40M4

54.141

99.598

0.539
  comM Glaesserella parasuis strain SC1401

53

100

0.533
  comM Haemophilus influenzae Rd KW20

53

100

0.533
  comM Legionella pneumophila str. Paris

50.6

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.6

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.491

100

0.457