Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJE46_RS22390 Genome accession   NZ_CP134767
Coordinates   4628728..4629258 (-) Length   176 a.a.
NCBI ID   WP_008455813.1    Uniprot ID   -
Organism   Cedecea neteri strain A2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4623728..4634258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJE46_RS22370 (RJE46_22370) - 4624734..4625669 (-) 936 WP_311888006.1 aromatic alcohol reductase -
  RJE46_RS22375 (RJE46_22375) - 4625814..4626725 (+) 912 WP_311888007.1 LysR family transcriptional regulator -
  RJE46_RS22380 (RJE46_22380) - 4626803..4628044 (+) 1242 WP_172744111.1 MFS transporter -
  RJE46_RS22385 (RJE46_22385) - 4627991..4628608 (-) 618 WP_311888008.1 hypothetical protein -
  RJE46_RS22390 (RJE46_22390) ssb 4628728..4629258 (-) 531 WP_008455813.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RJE46_RS22395 (RJE46_22395) uvrA 4629492..4632317 (+) 2826 WP_039289353.1 excinuclease ABC subunit UvrA -
  RJE46_RS22400 (RJE46_22400) - 4632318..4632671 (-) 354 WP_039289351.1 MmcQ/YjbR family DNA-binding protein -
  RJE46_RS22405 (RJE46_22405) aphA 4632810..4633523 (-) 714 WP_039289349.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18745.74 Da        Isoelectric Point: 5.2456

>NTDB_id=883402 RJE46_RS22390 WP_008455813.1 4628728..4629258(-) (ssb) [Cedecea neteri strain A2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=883402 RJE46_RS22390 WP_008455813.1 4628728..4629258(-) (ssb) [Cedecea neteri strain A2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGGAATCTGGGTCAGGACCCGGAAGTACGCTATATGCCAAATGG
GGGCGCTGTCGCCAACATTACACTGGCCACGTCAGAGTCCTGGCGTGATAAGCAAACCGGCGAAACCAAAGAAAAAACTG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCTGAAGTTGCCGGTGAATACCTGCGTAAAGGCTCTCAGGTTTATATT
GAAGGCGCACTGCAAACCCGTAAATGGACTGACCAGGCTGGCGTAGAAAAATACACGACCGAAGTCGTAGTTAACGTGGG
CGGCACCATGCAGATGCTCGGCGGCCGTCAGGGCGGCGGCGCACCGGCTGGCGGCAACGGCGGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGAGCGCACCG
GCGCCATCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.767
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.602
  ssb Neisseria meningitidis MC58

47.753

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

38.333

100

0.392