Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RMN59_RS20850 Genome accession   NZ_CP134705
Coordinates   4402315..4403835 (+) Length   506 a.a.
NCBI ID   WP_311381176.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. hormaechei strain Naas 2022_1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4397315..4408835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMN59_RS20825 (RMN59_20825) - 4398881..4399810 (-) 930 WP_006808638.1 branched-chain amino acid transaminase -
  RMN59_RS20830 (RMN59_20830) ilvM 4399829..4400092 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  RMN59_RS20835 (RMN59_20835) ilvG 4400089..4401735 (-) 1647 WP_311380981.1 acetolactate synthase 2 catalytic subunit -
  RMN59_RS20840 (RMN59_20840) ilvX 4401738..4401788 (-) 51 WP_166792073.1 peptide IlvX -
  RMN59_RS20845 (RMN59_20845) ilvL 4401875..4401973 (-) 99 WP_001311244.1 ilv operon leader peptide -
  RMN59_RS20850 (RMN59_20850) comM 4402315..4403835 (+) 1521 WP_311381176.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RMN59_RS20855 (RMN59_20855) - 4403863..4404201 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  RMN59_RS20860 (RMN59_20860) hdfR 4404320..4405141 (+) 822 WP_311381177.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54665.62 Da        Isoelectric Point: 7.5493

>NTDB_id=883034 RMN59_RS20850 WP_311381176.1 4402315..4403835(+) (comM) [Enterobacter hormaechei subsp. hormaechei strain Naas 2022_1]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLKTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPDSPDDLSDIMGQDQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPSGLLRQAGMKG
ESSAAVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=883034 RMN59_RS20850 WP_311381176.1 4402315..4403835(+) (comM) [Enterobacter hormaechei subsp. hormaechei strain Naas 2022_1]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCTATCGGCGTGAAGGCACCGCTTATCTCTGTGGAGGTTCATTTAAGCAA
TGGACTGCCCGGGTTGACGCTGGTCGGCTTGCCAGAAACGACCGTTAAAGAGGCGAGGGATCGCGTACGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAATCTTGCGCCAGCAGATTTGCCAAAGGAGGGTGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAAGACGCCAGGGCTAAGCTCGTGCGAGTTCGT
GGGCGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCAGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTAAGCCTTATCGCCGAAAAGGGATGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACATGAGCTTGCCGAACCGCAGGAGAATGACGAGGTGGCGCCAGATTCTCC
CGATGACCTCAGCGATATTATGGGCCAGGATCAGGGTAAGCGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGGTTGAACGGCCTGCTGCCACCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCAACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGCGCGTCTCTTACCGCGATGGTAGGCGGAGGGTCGATCCCCGGACCGGGTGAAATTTCACTGGCGC
ACAACGGCATTCTGTTTCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCGTTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGCGCTAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCTGCGATGAACCCTAG
CCCTACGGGACATTATCAGGGCAACCATAACCGCTGTACGCCGGAGCAGACCCTGCGCTATCTGAGTAAGCTGTCTGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTTGAGATCCCCCTGCCACCGTCCGGTCTGCTGAGACAAGCCGGTATGAAAGGG
GAAAGTTCAGCAGCGGTGCGCGAACGGGTTATTGCGGCGCAGGCGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACGCCGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTAGCGCGCACGGTCGCCGACGTGGAGGGCTGCCCCGGCATT
GAGAGGCGCCATTTGCAGGAGGCCTTAAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.121

100

0.587
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.437