Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RMN59_RS01900 Genome accession   NZ_CP134705
Coordinates   386904..387434 (+) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. hormaechei strain Naas 2022_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 381904..392434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMN59_RS01880 (RMN59_01880) aphA 382240..382953 (+) 714 WP_006810474.1 acid phosphatase AphA -
  RMN59_RS01885 (RMN59_01885) - 383066..383470 (+) 405 WP_311381332.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RMN59_RS01890 (RMN59_01890) - 383473..383826 (+) 354 WP_006810472.1 MmcQ/YjbR family DNA-binding protein -
  RMN59_RS01895 (RMN59_01895) uvrA 383830..386652 (-) 2823 WP_006810471.1 excinuclease ABC subunit UvrA -
  RMN59_RS01900 (RMN59_01900) ssb 386904..387434 (+) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RMN59_RS01905 (RMN59_01905) - 387496..387777 (-) 282 WP_022646751.1 YjcB family protein -
  RMN59_RS01910 (RMN59_01910) - 388437..390002 (+) 1566 WP_205925259.1 EAL domain-containing protein -
  RMN59_RS01915 (RMN59_01915) soxS 390009..390335 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  RMN59_RS01920 (RMN59_01920) soxR 390434..390892 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -
  RMN59_RS01925 (RMN59_01925) - 391250..391921 (+) 672 WP_213828441.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=883019 RMN59_RS01900 WP_006810470.1 386904..387434(+) (ssb) [Enterobacter hormaechei subsp. hormaechei strain Naas 2022_1]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=883019 RMN59_RS01900 WP_006810470.1 386904..387434(+) (ssb) [Enterobacter hormaechei subsp. hormaechei strain Naas 2022_1]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGAATCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTTAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369