Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RMA73_RS09815 Genome accession   NZ_CP134704
Coordinates   2167276..2168796 (+) Length   506 a.a.
NCBI ID   WP_058360258.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. translucens strain CO236     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2162276..2173796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMA73_RS09790 (RMA73_09815) speA 2163184..2165073 (-) 1890 WP_058360257.1 arginine decarboxylase -
  RMA73_RS09795 (RMA73_09820) speE 2165317..2166168 (+) 852 WP_003480505.1 polyamine aminopropyltransferase -
  RMA73_RS09800 (RMA73_09825) - 2166478..2166816 (-) 339 WP_003480503.1 P-II family nitrogen regulator -
  RMA73_RS09805 (RMA73_09830) - 2166842..2166994 (-) 153 WP_155616458.1 hypothetical protein -
  RMA73_RS09810 (RMA73_09835) - 2166993..2167262 (+) 270 WP_003480499.1 accessory factor UbiK family protein -
  RMA73_RS09815 (RMA73_09840) comM 2167276..2168796 (+) 1521 WP_058360258.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RMA73_RS09820 (RMA73_09845) - 2168939..2170096 (-) 1158 WP_311537001.1 lipocalin-like domain-containing protein -
  RMA73_RS09825 (RMA73_09850) - 2170093..2171181 (-) 1089 WP_229017781.1 lipocalin family protein -
  RMA73_RS09830 (RMA73_09855) - 2171585..2172418 (-) 834 WP_003480494.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53590.31 Da        Isoelectric Point: 8.6023

>NTDB_id=883007 RMA73_RS09815 WP_058360258.1 2167276..2168796(+) (comM) [Xanthomonas translucens pv. translucens strain CO236]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKDGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQAFTARTL
LEVCALLNGTKTLPAAEALPAAATPFPDMSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRVRVEQARQRQLARAGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAGSDA
IATAHLTEAIAYRHLDRGEAPLARSA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=883007 RMA73_RS09815 WP_058360258.1 2167276..2168796(+) (comM) [Xanthomonas translucens pv. translucens strain CO236]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTGTCCGG
CGGACTGCCGGCCACGCAGATCGTCGGCCTGCCTGAAGCGGCGGTGCGCGAATCGCGCGACCGGGTACGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCAATTGCGCTGGGCATCCTCGCCGCCGCAGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGCGCCGTGGACGGGGTGCTGCCGGCGGCGCTGGCCGCCGCCCAAGCCGGAC
GCACGCTGATCGTGCCCGCCGGCAACGGCCCCGAAGCGGCACTGGCGCAGCACGTGCAGGCGTTCACCGCGCGCACCCTG
CTCGAAGTCTGCGCACTGTTGAACGGCACCAAGACCTTGCCCGCCGCCGAAGCCCTGCCGGCCGCGGCCACGCCGTTTCC
CGACATGAGCGATGTGCGCGGGCAGGCCCAGGCGCGGCGCGCGCTGGAGATCGCGGCGGCCGGTCATCACCATCTGTTGT
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGACCCGGCGCGCTGGCGGCAACGCCCCTATCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGAGGCGGTACCCATCCGCGCCCCGGCGAAATCTCGCTGGCGCATC
GCGGCGTGTTGTTCCTCGACGAGTTGCCCGAATGGAACCGGCACGCCCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACCGTCTCGCGCGCAGCACGCAGCGCCGAATTCCCGGCCCGCTTCCAGCTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTATCGCGCGCGCATCTCCG
GCCCGTTGCTGGACCGCATCGACCTGCATGTGGACGTACCGCGCCTGCCGCCGCAGGCATTGCGCGCCGATGCCGCTCCC
GGCGAAAGCAGCGCCGCCGTACGCGTGCGGGTGGAGCAGGCGCGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAAACCCTGCGCGACTGCCGCCTGCAGCCGCGCGACGAGGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCCCTGCACCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCCGGCAGCGACGCG
ATCGCCACCGCGCATCTGACCGAGGCGATCGCGTACCGGCACCTGGACCGCGGCGAGGCACCATTGGCGCGCAGCGCCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.912

98.617

0.551
  comM Vibrio campbellii strain DS40M4

54.382

99.209

0.54
  comM Haemophilus influenzae Rd KW20

53.77

99.605

0.536
  comM Glaesserella parasuis strain SC1401

52.976

99.605

0.528
  comM Legionella pneumophila str. Paris

50.803

98.419

0.5
  comM Legionella pneumophila strain ERS1305867

50.803

98.419

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.447