Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RIK60_RS07275 Genome accession   NZ_CP134686
Coordinates   1289404..1290924 (+) Length   506 a.a.
NCBI ID   WP_057067459.1    Uniprot ID   A0AAU7HI17
Organism   Citrobacter portucalensis strain 64A:C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1284404..1295924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK60_RS07255 (RIK60_07255) - 1285960..1286889 (-) 930 WP_003018014.1 branched-chain amino acid transaminase -
  RIK60_RS07260 (RIK60_07260) ilvM 1286907..1287170 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  RIK60_RS07265 (RIK60_07265) ilvG 1287167..1288813 (-) 1647 WP_311394357.1 acetolactate synthase 2 catalytic subunit -
  RIK60_RS07270 (RIK60_07270) ilvL 1288953..1289051 (-) 99 WP_001311244.1 ilv operon leader peptide -
  RIK60_RS07275 (RIK60_07275) comM 1289404..1290924 (+) 1521 WP_057067459.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RIK60_RS07280 (RIK60_07280) maoP 1290949..1291287 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  RIK60_RS07285 (RIK60_07285) hdfR 1291394..1292239 (+) 846 WP_008787063.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55092.02 Da        Isoelectric Point: 7.2885

>NTDB_id=882721 RIK60_RS07275 WP_057067459.1 1289404..1290924(+) (comM) [Citrobacter portucalensis strain 64A:C]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPCALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSQVKG
EDSATVKQRVMAARERQYRRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=882721 RIK60_RS07275 WP_057067459.1 1289404..1290924(+) (comM) [Citrobacter portucalensis strain 64A:C]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCTCGCGATCGAGTTCGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCAGCATCTGAGCAGCTTACAACCCATAACCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACTGAAGCTATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTGGGACTGATACACGGTGAAGGGTGCCTGATAGCCGATCATCTA
CAGGCCGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGACCATCATCGGCAGATTTTACCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGACTGGAACTTACCGCAGCTGGCGGTCATAACCTCT
TACTCATCGGGCCGCCGGGAACGGGTAAGACCATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTAAGCAATGAT
GAAGCACTGGAAAGCGCCGCGATTCTAAGTCTGGTCAATTCCGACACGCTACAAAAACAGTGGAAACAACGCCCTTTTCG
TTCGCCGCATCACAGTGCTTCATTAACCGCCATGGTCGGTGGCGGCTCTATTCCTGCGCCAGGCGAGATATCTCTGGCGC
ATAACGGCATACTGTTTCTGGATGAACTTCCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGAGAGCCCATTGAGTCC
GGGCAGATTCATTTATCCCGCACTCGGGCAAAAATAACTTACCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCCAG
CCCAACAGGACATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACGCTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGATCTCTCCCTCGAAATCCCCTTACCGCCGCCCGGCATACTCAGCCAGAGCCAGGTAAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGCGTTATGGCAGCACGAGAGCGTCAGTATCGGCGGCAGAATAAGTTAAATGCGCA
CCTGGACAGTCAGGATATCCATAAATACTGTCCATTGCGTAGCGACGATGCGCAATGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCATGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAACAATCTGACCATATC
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Haemophilus influenzae Rd KW20

57.451

100

0.579
  comM Glaesserella parasuis strain SC1401

57.677

100

0.579
  comM Legionella pneumophila str. Paris

47.284

98.221

0.464
  comM Legionella pneumophila strain ERS1305867

47.284

98.221

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.659

99.605

0.425