Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RIL75_RS01625 Genome accession   NZ_CP134674
Coordinates   327704..329224 (+) Length   506 a.a.
NCBI ID   WP_095455772.1    Uniprot ID   -
Organism   Enterobacter cloacae strain 99183042147     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 322704..334224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIL75_RS01600 (RIL75_01600) ilvE 324270..325199 (-) 930 WP_013099287.1 branched-chain-amino-acid transaminase -
  RIL75_RS01605 (RIL75_01605) ilvM 325218..325481 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  RIL75_RS01610 (RIL75_01610) ilvG 325478..327124 (-) 1647 WP_095455773.1 acetolactate synthase 2 catalytic subunit -
  RIL75_RS01615 (RIL75_01615) ilvX 327127..327177 (-) 51 WP_102046757.1 peptide IlvX -
  RIL75_RS01620 (RIL75_01620) ilvL 327264..327362 (-) 99 WP_023620831.1 ilv operon leader peptide -
  RIL75_RS01625 (RIL75_01625) comM 327704..329224 (+) 1521 WP_095455772.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RIL75_RS01630 (RIL75_01630) - 329257..329595 (-) 339 WP_013099290.1 DUF413 domain-containing protein -
  RIL75_RS01635 (RIL75_01635) hdfR 329714..330535 (+) 822 WP_020685959.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55000.00 Da        Isoelectric Point: 7.0679

>NTDB_id=882691 RIL75_RS01625 WP_095455772.1 327704..329224(+) (comM) [Enterobacter cloacae strain 99183042147]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTARLGSYEFIGELALTGALRGVPGAISGALEAIYAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAHLEGRLTLSEPEETGDILPESPDDLSDIIGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQTTIRG
ESTAKVRERVITSQARQYARQHKLNARLDNAEIRQFCHLKAEDACWLEETLTRFGLSIRAWQRLLKVARTIADVEGDPEI
ERHHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=882691 RIL75_RS01625 WP_095455772.1 327704..329224(+) (comM) [Enterobacter cloacae strain 99183042147]
ATGTCACTGTCAGTTGTTTACACGCGTGCGGCGATCGGAGTAAAGGCACCGCTTATTTCTGTGGAGGTTCATCTGAGTAA
TGGGCTCCCTGGGCTAACGCTTGTCGGCTTGCCAGAAACCACGGTCAAAGAAGCCAGAGATCGGGTTCGCAGCGCAATTA
TCAATAGCGGTTATACCTTCCCCGCCAAGAAGATCACGATCAACCTTGCTCCCGCAGATCTGCCCAAGGAGGGCGGACGA
TACGATTTACCTATCGCTATTGCGCTTCTCGCAGCCTCTGAGCAGCTCAACACTGCGAGGCTAGGCTCGTACGAGTTCAT
TGGCGAACTGGCGCTTACAGGCGCGTTAAGAGGCGTTCCTGGCGCCATCTCTGGTGCGCTGGAAGCCATTTATGCCGGTC
GACAAATTATTGTAGCCAATGAAAATGCCTCAGAAGTGAGCCTGATTGCCGAGAAAGGATGCCTGGTCGCGGGGCATTTA
CAGGAAGTCTGCGCGCACCTTGAAGGCCGACTTACCCTCTCCGAGCCAGAGGAAACCGGAGATATCCTGCCTGAAAGCCC
GGACGACCTCAGCGATATTATCGGGCAGGAGCAGGGGAAGCGGGCACTGGAGATCACCGCAGCCGGAGGACATAACCTGT
TGCTGATTGGCCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCAGGCTGAATGGGTTATTGCCACCACTCAATAATCAT
GAGGCACTTGAAAGCGCAGCGATATTTAGCCTGGTGAGCTCTGCATCATTGCAAAAACAGTGGCGACGACGCCCTTTTCG
CTCTCCCCATCACAGTGCCTCCCTGACGGCCATGGTCGGAGGGGGCTCCATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATCCTGTTCCTTGATGAACTGCCTGAGTTTGAACGCCGCGTACTGGATGCCCTGCGGGAACCTATCGAATCT
GGCGAGATCCATATCTCCCGCACGCGCGCCAAAATAAGCTACCCGGCACAGTTCCAGCTGGTTGCCGCCATGAACCCCAG
CCCATCAGGCCATTATCAGGGAAATCATAATCGCTGCACGCCTGAGCAGACGCTGCGCTATCTGGGGAAGCTGTCAGGCC
CTTTCCTCGATCGTTTTGATTTATCCCTGGAGATCCCCTTACCGCCCCCTGGTTTGCTCAGCCAGACAACGATACGCGGT
GAGAGCACAGCGAAGGTTCGCGAACGGGTTATCACCTCACAGGCCCGACAGTACGCTCGTCAACATAAGCTAAATGCGCG
TCTGGATAATGCTGAGATTCGGCAGTTTTGCCATCTTAAGGCTGAGGATGCCTGCTGGCTTGAAGAGACATTGACGCGAT
TTGGGCTCTCGATCCGTGCATGGCAGCGCCTGCTGAAAGTGGCTCGCACTATTGCCGATGTGGAAGGAGACCCAGAGATT
GAAAGACACCATCTGCAGGAAGCGCTGAGCTATCGCGCCATAGATCGGTTGTTGCTGCACCTGCAAAAATTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.789

100

0.595
  comM Glaesserella parasuis strain SC1401

59.172

100

0.593
  comM Vibrio cholerae strain A1552

59.761

99.209

0.593
  comM Vibrio campbellii strain DS40M4

59.443

99.407

0.591
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441