Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RIK62_RS07110 Genome accession   NZ_CP134671
Coordinates   1472420..1472947 (+) Length   175 a.a.
NCBI ID   WP_020882840.1    Uniprot ID   A0A839BRA2
Organism   Enterobacter ludwigii strain 99202523580     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1467420..1477947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK62_RS07090 (RIK62_07090) aphA 1467743..1468456 (+) 714 WP_014168217.1 acid phosphatase AphA -
  RIK62_RS07095 (RIK62_07095) - 1468570..1468986 (+) 417 WP_160890463.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RIK62_RS07100 (RIK62_07100) - 1468989..1469342 (+) 354 WP_014168219.1 MmcQ/YjbR family DNA-binding protein -
  RIK62_RS07105 (RIK62_07105) uvrA 1469346..1472168 (-) 2823 WP_014168220.1 excinuclease ABC subunit UvrA -
  RIK62_RS07110 (RIK62_07110) ssb 1472420..1472947 (+) 528 WP_020882840.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RIK62_RS07115 (RIK62_07115) - 1473011..1473292 (-) 282 WP_063858547.1 YjcB family protein -
  RIK62_RS07120 (RIK62_07120) - 1473782..1475182 (+) 1401 WP_044857504.1 sensor domain-containing diguanylate cyclase -
  RIK62_RS07125 (RIK62_07125) - 1475522..1477087 (+) 1566 WP_063858548.1 EAL domain-containing protein -
  RIK62_RS07130 (RIK62_07130) soxS 1477094..1477420 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18705.74 Da        Isoelectric Point: 5.2456

>NTDB_id=882681 RIK62_RS07110 WP_020882840.1 1472420..1472947(+) (ssb) [Enterobacter ludwigii strain 99202523580]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=882681 RIK62_RS07110 WP_020882840.1 1472420..1472947(+) (ssb) [Enterobacter ludwigii strain 99202523580]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGCCAGTTGCGTACCCGCAAATGGACCGATCAAGCCGGCGCTGAGAAGTACACCACGGAAGTTGTGGTCAACGTGGG
TGGCACCATGCAGATGCTCGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCCGCGCCAGCA
CCGTCTAACGAACCCCCAATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BRA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.777
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.594
  ssb Neisseria meningitidis MC58

46.629

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.474
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.366