Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RIK61_RS01635 Genome accession   NZ_CP134649
Coordinates   325061..326581 (+) Length   506 a.a.
NCBI ID   WP_049023041.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain 51A:C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 320061..331581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK61_RS01610 (RIK61_01610) ilvE 321629..322558 (-) 930 WP_025202772.1 branched-chain-amino-acid transaminase -
  RIK61_RS01615 (RIK61_01615) ilvM 322577..322840 (-) 264 WP_014172166.1 acetolactate synthase 2 small subunit -
  RIK61_RS01620 (RIK61_01620) ilvG 322837..324483 (-) 1647 WP_311382951.1 acetolactate synthase 2 catalytic subunit -
  RIK61_RS01625 (RIK61_01625) ilvX 324486..324536 (-) 51 WP_102046757.1 peptide IlvX -
  RIK61_RS01630 (RIK61_01630) ilvL 324623..324721 (-) 99 WP_001311244.1 ilv operon leader peptide -
  RIK61_RS01635 (RIK61_01635) comM 325061..326581 (+) 1521 WP_049023041.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RIK61_RS01640 (RIK61_01640) - 326609..326947 (-) 339 WP_014172168.1 DUF413 domain-containing protein -
  RIK61_RS01645 (RIK61_01645) hdfR 327066..327887 (+) 822 WP_014172169.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55028.04 Da        Isoelectric Point: 7.3481

>NTDB_id=882623 RIK61_RS01635 WP_049023041.1 325061..326581(+) (comM) [Enterobacter ludwigii strain 51A:C]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNSSRLGAYEFIGELALTGALRGVPGAISGALEAIRAGRQIIVANENGAEVSLIAERGCLLAGHL
QEVCAYLEGQHVLSEPEESGDPLAESPDDLSDIYGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSVSLQKQWRRRPFRSPHHSASLAAMVGGGTIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRARAKISYPARFQLVAAMNPSPSGHYQGNHNRSTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQSSARG
ESTVEVRERVIAAQARQYMRQHKLNARLDNAEIRQFCPLKTEDSCWLEDTLTRFGLSIRAWQRLIKVARTIADVEKCPDI
ERRHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=882623 RIK61_RS01635 WP_049023041.1 325061..326581(+) (comM) [Enterobacter ludwigii strain 51A:C]
ATGTCACTGTCAGTTGTTTATACCCGAGCGGCCATTGGAGTAAAAGCACCGCTTATTTCGGTAGAAGTTCATCTCAGCAA
CGGACTGCCCGGGCTGACGCTGGTTGGATTGCCGGAGACCACGGTAAAGGAAGCCAGAGATCGGGTGCGCAGTGCGATTA
TTAATAGCGGTTATACCTTTCCGGCAAAGAAAATCACCATCAACCTTGCGCCTGCAGACTTGCCTAAAGAGGGAGGGCGA
TATGATTTACCTATCGCTATAGCGCTCCTCGCCGCCTCTGAGCAGCTTAACAGCAGCAGACTAGGCGCATATGAGTTCAT
CGGTGAACTGGCGCTCACAGGCGCGCTGAGGGGCGTTCCTGGTGCCATCTCGGGTGCGCTGGAGGCCATTCGCGCAGGTC
GACAAATCATTGTTGCCAATGAAAATGGTGCAGAAGTGAGCCTGATAGCCGAGAGAGGATGTCTGCTAGCCGGGCATTTA
CAGGAAGTGTGCGCGTATCTTGAGGGGCAACATGTGCTGTCAGAGCCGGAAGAATCAGGCGATCCCCTGGCAGAAAGCCC
GGACGATCTGAGCGATATTTACGGCCAGGAGCAGGGTAAGCGGGCGCTGGAGATCACCGCTGCCGGCGGACATAACCTGT
TGTTGATTGGCCCACCGGGTACAGGAAAAACGATGCTGGCGAGCAGGTTGAATGGTTTACTGCCTCCACTTAATAACCAT
GAAGCGCTGGAAAGCGCGGCGATATTTAGTCTGGTGAGTTCAGTGTCATTGCAAAAACAGTGGCGACGTCGCCCGTTTCG
CTCTCCGCACCACAGTGCCTCACTGGCGGCCATGGTCGGCGGTGGCACCATACCAGGGCCGGGAGAGATCTCTCTGGCGC
ACAACGGCATCCTGTTTCTGGATGAACTGCCTGAATTTGAACGCCGCGTTCTGGATGCGCTGAGGGAGCCCATCGAATCG
GGTGAGATCCATATCTCCCGTGCACGCGCCAAAATAAGCTATCCCGCGCGGTTCCAGCTGGTAGCGGCAATGAACCCCAG
CCCATCGGGCCATTATCAGGGAAACCACAATCGCTCCACGCCTGAACAGACGCTACGCTACCTGGGGAAGTTATCTGGTC
CTTTCCTGGATCGTTTCGATTTGTCGCTGGAAATCCCCTTGCCTCCTCCCGGCCTGCTCAGCCAGAGCAGCGCCAGAGGA
GAGAGTACGGTGGAGGTTCGCGAGCGGGTTATCGCCGCGCAGGCCCGGCAGTATATGCGTCAACATAAGCTGAATGCCCG
TCTGGATAACGCTGAGATTCGGCAGTTTTGTCCTCTTAAGACTGAAGATTCATGCTGGCTGGAGGATACGTTGACGCGCT
TTGGGCTTTCCATTCGCGCATGGCAGCGTCTTATAAAAGTCGCCCGCACCATCGCCGATGTGGAAAAGTGCCCTGACATT
GAGAGGCGGCATCTACAGGAAGCGTTAAGCTATCGTGCGATCGATCGCTTGCTCCTGCACCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.359

99.209

0.599
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Haemophilus influenzae Rd KW20

57.957

100

0.583
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439