Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RIK65_RS20205 Genome accession   NZ_CP134642
Coordinates   4250044..4250574 (-) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter asburiae strain 30A:C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4245044..4255574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK65_RS20180 (RIK65_20180) - 4245576..4246247 (-) 672 WP_311391361.1 glutathione S-transferase -
  RIK65_RS20185 (RIK65_20185) soxR 4246600..4247058 (-) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  RIK65_RS20190 (RIK65_20190) soxS 4247157..4247483 (+) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  RIK65_RS20195 (RIK65_20195) - 4247490..4249055 (-) 1566 WP_311391362.1 EAL domain-containing protein -
  RIK65_RS20200 (RIK65_20200) - 4249700..4249981 (+) 282 WP_008503385.1 YjcB family protein -
  RIK65_RS20205 (RIK65_20205) ssb 4250044..4250574 (-) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RIK65_RS20210 (RIK65_20210) uvrA 4250825..4253647 (+) 2823 WP_029740212.1 excinuclease ABC subunit UvrA -
  RIK65_RS20215 (RIK65_20215) - 4253651..4254004 (-) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  RIK65_RS20220 (RIK65_20220) - 4254007..4254423 (-) 417 WP_029740213.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RIK65_RS20225 (RIK65_20225) aphA 4254537..4255250 (-) 714 WP_024906720.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=882616 RIK65_RS20205 WP_023310055.1 4250044..4250574(-) (ssb) [Enterobacter asburiae strain 30A:C]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=882616 RIK65_RS20205 WP_023310055.1 4250044..4250574(-) (ssb) [Enterobacter asburiae strain 30A:C]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTAGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACGACTGAAGTCGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCACGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364