Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RIK65_RS00050 Genome accession   NZ_CP134642
Coordinates   7121..8641 (-) Length   506 a.a.
NCBI ID   WP_311391563.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 30A:C     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2121..13641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK65_RS00040 (RIK65_00040) hdfR 5812..6633 (-) 822 WP_029739573.1 HTH-type transcriptional regulator HdfR -
  RIK65_RS00045 (RIK65_00045) - 6752..7090 (+) 339 WP_023309658.1 DUF413 domain-containing protein -
  RIK65_RS00050 (RIK65_00050) comM 7121..8641 (-) 1521 WP_311391563.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RIK65_RS00055 (RIK65_00055) ilvL 8983..9081 (+) 99 WP_001311244.1 ilv operon leader peptide -
  RIK65_RS00060 (RIK65_00060) ilvX 9168..9218 (+) 51 WP_166792073.1 peptide IlvX -
  RIK65_RS00065 (RIK65_00065) ilvG 9221..10867 (+) 1647 WP_311391564.1 acetolactate synthase 2 catalytic subunit -
  RIK65_RS00070 (RIK65_00070) ilvM 10864..11127 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  RIK65_RS00075 (RIK65_00075) ilvE 11146..12075 (+) 930 WP_023326297.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54909.83 Da        Isoelectric Point: 6.9623

>NTDB_id=882599 RIK65_RS00050 WP_311391563.1 7121..8641(-) (comM) [Enterobacter asburiae strain 30A:C]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIVVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=882599 RIK65_RS00050 WP_311391563.1 7121..8641(-) (comM) [Enterobacter asburiae strain 30A:C]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGTAA
TGGGCTACCTGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATGCCTTCCCCGCGAAGAAGATCACCATCAACCTTGCTCCTGCCGATCTACCCAAAGAGGGGGGACGA
TATGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGGGCGATATCGGGAGCGCTGGAAGCCATACGTGCTGGGC
GGCAAATCGTTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGCCTCATCGCGGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGCCGACATGAACTATCCGAGCCGGAGGAGTGTGATGATGCTATAGCGGATGCTCC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCTGCAGGTGGACACAATCTTC
TGTTAATTGGTCCGCCGGGTACGGGTAAAACGATGCTGGCAAGCAGGTTGAGTGGGTTGCTTCCACCGCTTAATAATCAT
GAAGCGCTGGAAAGCGCCGCCATATACAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGAGGGTCTATCCCCGGACCGGGAGAGATCTCGCTGGCGC
ACAATGGCATTCTGTTTCTTGATGAGCTGCCTGAGTTTGAGCGTCGAGTGCTGGATGCACTGAGGGAACCTATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCGCGGTTTCAGCTGGTCGCGGCGATGAACCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCTCTTCCCCCGCCGGGTCTGCTCAGGCAAACGGGCATTACGGGT
GAAAGCTCAGCGGATGTACGCGAGCGGGTGATTGCAGCCCAGACGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCACG
GCTGGATAATGCCGGGATCCGACAGTTCTGTTCTCTTAACGTCGAGGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTACTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.929

99.605

0.587
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439