Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RIK64_RS07200 Genome accession   NZ_CP134639
Coordinates   1512863..1513393 (+) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain 31A:C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1507863..1518393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK64_RS07180 (RIK64_07180) aphA 1508187..1508900 (+) 714 WP_126818754.1 acid phosphatase AphA -
  RIK64_RS07185 (RIK64_07185) - 1509013..1509429 (+) 417 WP_041911536.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RIK64_RS07190 (RIK64_07190) - 1509432..1509785 (+) 354 WP_028015174.1 MmcQ/YjbR family DNA-binding protein -
  RIK64_RS07195 (RIK64_07195) uvrA 1509789..1512611 (-) 2823 WP_126818755.1 excinuclease ABC subunit UvrA -
  RIK64_RS07200 (RIK64_07200) ssb 1512863..1513393 (+) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RIK64_RS07205 (RIK64_07205) - 1513454..1513735 (-) 282 WP_126818756.1 YjcB family protein -
  RIK64_RS07210 (RIK64_07210) - 1514392..1515957 (+) 1566 WP_028015177.1 EAL domain-containing protein -
  RIK64_RS07215 (RIK64_07215) soxS 1515964..1516290 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  RIK64_RS07220 (RIK64_07220) soxR 1516389..1516847 (+) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  RIK64_RS07225 (RIK64_07225) - 1517135..1517806 (+) 672 WP_028015178.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=882569 RIK64_RS07200 WP_006810470.1 1512863..1513393(+) (ssb) [Enterobacter bugandensis strain 31A:C]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=882569 RIK64_RS07200 WP_006810470.1 1512863..1513393(+) (ssb) [Enterobacter bugandensis strain 31A:C]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTAGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAACCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCT
GCTCCGTCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369