Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RIK63_RS22225 Genome accession   NZ_CP134636
Coordinates   4610456..4610986 (+) Length   176 a.a.
NCBI ID   WP_029740211.1    Uniprot ID   A0A263VT06
Organism   Enterobacter asburiae strain 10A:C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4605456..4615986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK63_RS22205 (RIK63_22205) aphA 4605780..4606493 (+) 714 WP_059347291.1 acid phosphatase AphA -
  RIK63_RS22210 (RIK63_22210) - 4606607..4607023 (+) 417 WP_029740213.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RIK63_RS22215 (RIK63_22215) - 4607026..4607379 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  RIK63_RS22220 (RIK63_22220) uvrA 4607383..4610205 (-) 2823 WP_029740212.1 excinuclease ABC subunit UvrA -
  RIK63_RS22225 (RIK63_22225) ssb 4610456..4610986 (+) 531 WP_029740211.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RIK63_RS22230 (RIK63_22230) - 4611048..4611329 (-) 282 WP_008503385.1 YjcB family protein -
  RIK63_RS22235 (RIK63_22235) - 4611976..4613541 (+) 1566 WP_121932728.1 EAL domain-containing protein -
  RIK63_RS22240 (RIK63_22240) soxS 4613548..4613874 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  RIK63_RS22245 (RIK63_22245) soxR 4613973..4614431 (+) 459 WP_023310057.1 redox-sensitive transcriptional activator SoxR -
  RIK63_RS22250 (RIK63_22250) - 4614725..4615396 (+) 672 WP_121932727.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18792.81 Da        Isoelectric Point: 5.2456

>NTDB_id=882530 RIK63_RS22225 WP_029740211.1 4610456..4610986(+) (ssb) [Enterobacter asburiae strain 10A:C]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=882530 RIK63_RS22225 WP_029740211.1 4610456..4610986(+) (ssb) [Enterobacter asburiae strain 10A:C]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTAGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCGCTGAGAAGTACACCACAGAAGTCGTGGTCAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGTGCACCGGCAGGTGGCGGCCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCCCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A263VT06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.773
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364