Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RIK63_RS19970 Genome accession   NZ_CP134636
Coordinates   4132432..4133952 (+) Length   506 a.a.
NCBI ID   WP_121930905.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 10A:C     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4127432..4138952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIK63_RS19945 (RIK63_19945) ilvE 4128998..4129927 (-) 930 WP_023326297.1 branched-chain-amino-acid transaminase -
  RIK63_RS19950 (RIK63_19950) ilvM 4129946..4130209 (-) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  RIK63_RS19955 (RIK63_19955) ilvG 4130206..4131852 (-) 1647 WP_029739571.1 acetolactate synthase 2 catalytic subunit -
  RIK63_RS19960 (RIK63_19960) ilvX 4131855..4131905 (-) 51 WP_166792073.1 peptide IlvX -
  RIK63_RS19965 (RIK63_19965) ilvL 4131992..4132090 (-) 99 WP_001311244.1 ilv operon leader peptide -
  RIK63_RS19970 (RIK63_19970) comM 4132432..4133952 (+) 1521 WP_121930905.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RIK63_RS19975 (RIK63_19975) - 4133982..4134320 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  RIK63_RS19980 (RIK63_19980) hdfR 4134439..4135260 (+) 822 WP_121930906.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54895.80 Da        Isoelectric Point: 6.8203

>NTDB_id=882525 RIK63_RS19970 WP_121930905.1 4132432..4133952(+) (comM) [Enterobacter asburiae strain 10A:C]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRARAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=882525 RIK63_RS19970 WP_121930905.1 4132432..4133952(+) (comM) [Enterobacter asburiae strain 10A:C]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTAAGTAA
TGGGCTACCGGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGAGCAGGAC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTCATCGCGGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGGCGTCATGAACTGTCCGAGCCGGAGGAGTGCGATGATGCTATAGCGGATGCTCC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCGGCAGGTGGACACAATCTTC
TGTTAATTGGCCCGCCGGGTACGGGTAAAACAATGCTGGCAAGCAGGTTAAGTGGGTTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATATATAGCCTTATCAGTTCGACGTCGTTGCAAAAACAGTGGCGCCGCCGTCCTTTTCG
TTCGCCACATCATAGCGCTTCACTGACGGCAATGGTTGGCGGTGGGTCTATCCCCGGGCCGGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTATTTCTCGATGAGCTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGAGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCGCACGAGCGAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAACCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGTCTACTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGATGTACGCGAGCGGGTGATTGCAGCCCAGACGCGGCAGTACGCTCGTCAGAACAGGCTGAATGCGCG
GCTGGATAATGCCGGGATCCGACAGTTCTGTTCTCTTAACGTTGAGGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGGCTGTCTATACGTGCGTGGCAGCGTTTGTTGAAAGTGGCCAGAACTATTGCTGACGTGGAGGGATGCACTGACATT
GAGAGAAAGCATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.546

100

0.589
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443